Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n18
(646 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF592178-1|ABQ95974.1| 532|Tribolium castaneum tyrosine hydroxy... 24 0.93
AM292369-1|CAL23181.1| 408|Tribolium castaneum gustatory recept... 24 1.2
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 24 1.2
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 23 2.8
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 23 2.8
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 23 2.8
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 23 2.8
>EF592178-1|ABQ95974.1| 532|Tribolium castaneum tyrosine
hydroxylase protein.
Length = 532
Score = 24.2 bits (50), Expect = 0.93
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 504 HTLKGECRHMLLHHWPFLFESS 439
HT + +C H LL H P L + S
Sbjct: 352 HTPEPDCIHELLGHMPLLADPS 373
>AM292369-1|CAL23181.1| 408|Tribolium castaneum gustatory receptor
candidate 48 protein.
Length = 408
Score = 23.8 bits (49), Expect = 1.2
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = -3
Query: 530 FIHLQLDNHTL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTY 363
F +L+N++L +N + +GL+ LN + ++ +I N + F V+ +
Sbjct: 316 FCKKKLENYSLQLINHRVVFTAMGLYVLNMEHFFSVKCSIQSESLLNDILFPVAGF 371
Score = 21.0 bits (42), Expect = 8.7
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = -3
Query: 374 VSTYNL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNF 210
+ Y+L +N + +GL+ LN + ++ +I N + F V+ + +F
Sbjct: 321 LENYSLQLINHRVVFTAMGLYVLNMEHFFSVKCSIQSESLLNDILFPVAGFISDF 375
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
protein protein.
Length = 1156
Score = 23.8 bits (49), Expect = 1.2
Identities = 19/88 (21%), Positives = 36/88 (40%)
Frame = +3
Query: 12 SVLSRVVLAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSM 191
S +S V+ K F+ S + H+ HI R + S + ++ KS+
Sbjct: 542 SHVSAVLTCKVCDQAFSSLKELSNHMVKNSHYK--EHIMRSITESGGRRRQTREKRKKSL 599
Query: 192 PIRKDDEVQVVRGHYKGQQVGKVMQVYR 275
P+RK E++ + +K ++ R
Sbjct: 600 PVRKLLELERAQHEFKNGDSSSLLDKMR 627
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +1
Query: 556 EQRADWLHLAKTRVNTPRKLPQPW 627
++ A +H R+ P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 317 GQWCNSICRHSP 352
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 458 GQWCNSICRHSP 493
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +1
Query: 556 EQRADWLHLAKTRVNTPRKLPQPW 627
++ A +H R+ P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 317 GQWCNSICRHSP 352
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 458 GQWCNSICRHSP 493
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +1
Query: 556 EQRADWLHLAKTRVNTPRKLPQPW 627
++ A +H R+ P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 317 GQWCNSICRHSP 352
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 458 GQWCNSICRHSP 493
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +1
Query: 556 EQRADWLHLAKTRVNTPRKLPQPW 627
++ A +H R+ P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 317 GQWCNSICRHSP 352
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 458 GQWCNSICRHSP 493
G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,699
Number of Sequences: 336
Number of extensions: 3587
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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