Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n17
(270 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0102 + 1060539-1060657,1060752-1060904,1061478-1061728,106... 30 0.29
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 29 0.67
09_02_0449 - 9461385-9461431,9461487-9461628,9461733-9461831,946... 27 2.1
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 27 2.7
11_01_0732 + 6065852-6066531,6067066-6067141,6067231-6067357,606... 27 2.7
10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738... 27 2.7
02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128... 27 2.7
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 26 3.6
11_03_0053 + 9339386-9339781 26 4.7
09_04_0697 + 19566182-19566851,19567565-19567598,19567677-195677... 25 6.3
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 25 6.3
02_01_0199 + 1341340-1341732,1341990-1342424,1343029-1343584,134... 25 6.3
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 25 6.3
12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223... 25 8.3
11_01_0293 + 2207782-2208148,2208515-2208567,2208622-2208698,220... 25 8.3
07_03_0950 + 22828787-22828982,22829091-22829164,22829512-228295... 25 8.3
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 25 8.3
04_01_0101 + 1041755-1041864,1041950-1042102,1042174-1042424,104... 25 8.3
01_07_0226 + 42130300-42131430,42131530-42131715,42133244-421333... 25 8.3
>04_01_0102 +
1060539-1060657,1060752-1060904,1061478-1061728,
1061959-1062141,1062248-1062395,1062679-1062850,
1062971-1063105,1063210-1063356
Length = 435
Score = 29.9 bits (64), Expect = 0.29
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Frame = +2
Query: 5 LNRSIKRLGSSDVVFSSDYVPN--AMNVLNKVKETLPRNQYKAKHNK--ITLLQNL---T 163
++ ++ +G FS +P+ A++V++ V L R+Q+KA H + T+ NL
Sbjct: 248 ISDNVPSIGKFITDFSESELPSVPALSVISHVMRGLQRSQFKANHAEWVNTVKPNLGPGL 307
Query: 164 REQLIDAVQSSMTE 205
RE++++A+ S E
Sbjct: 308 RERILEAIASGDNE 321
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 28.7 bits (61), Expect = 0.67
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -3
Query: 217 CNLTFRHARLHGIDELFSSQVLQQRDLVVLGFVLVSRQRFFNFVKHV 77
C L + + +G + LFS+ + +L++LGF+ F F+ H+
Sbjct: 138 CILVHQVLKFNGQEALFSALQRVKEELMLLGFISFLLSVFQKFINHI 184
>09_02_0449 -
9461385-9461431,9461487-9461628,9461733-9461831,
9462052-9462100,9462179-9462212,9462880-9463055,
9463094-9463532,9463784-9463971,9463988-9464496
Length = 560
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 189 CTASMSCSRVKFCNSVILLCLALYWFRGSVSLTLLSTFMALG 64
C A+ + C + L +A Y+F +LT ++T A+G
Sbjct: 246 CAAAAVAAAGDGCRAGCSLAIAAYYFSEGSNLTFIATIFAIG 287
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 7/32 (21%)
Frame = +3
Query: 84 LTKLKKRC--LETSTKPS-----TTRSRCCKT 158
L +L+KR LE+S++PS TTR RCCK+
Sbjct: 286 LKELEKRVEELESSSQPSPRPMETTRRRCCKS 317
>11_01_0732 +
6065852-6066531,6067066-6067141,6067231-6067357,
6068084-6068289
Length = 362
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 149 LQNLTREQLIDAVQSSMTERQIAR 220
L++L +EQLI Q M ER+I R
Sbjct: 283 LESLAQEQLIKRFQQEMFEREIGR 306
>10_06_0083 +
10471648-10471806,10473261-10473343,10473384-10473810,
10475806-10475932,10476329-10476471,10476687-10476749,
10476833-10476898,10477047-10477085
Length = 368
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +2
Query: 2 SLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLID 181
S +RS+ S FSS + L+K++ T ++ H + N +REQL+D
Sbjct: 290 SFSRSMSCDSHSKASFSSSSRAHTKVDLSKLEMTALWRYWR--HFNLDASPNPSREQLVD 347
Query: 182 AVQSSMTERQIAR 220
AVQ + R
Sbjct: 348 AVQRHFVSQAAKR 360
>02_02_0620 +
12210812-12210997,12212397-12212474,12212744-12212848,
12212998-12213022,12213214-12213266,12213523-12213635,
12213777-12213801,12214560-12214601,12214666-12214726,
12216027-12216043,12217143-12217257,12217431-12218659
Length = 682
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Frame = +2
Query: 44 VFSSDYVPNAMNVLNKVKE-------TLPRNQYKAKHNKI---TLLQNLTREQLIDAV 187
V S+D + AM K+K+ +LP N K KHN + L +RE LID V
Sbjct: 90 VISNDKILKAMTSNGKLKDMFAKILHSLPANYGKEKHNNVENGITLVGASREILIDVV 147
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 109 RQRFFNFVKHVHGVG-HIVAAKYHVGRTQAFN 17
+ RF NF+KH+ +G ++ H G Q F+
Sbjct: 34 KNRFQNFIKHLREMGDEVIVVTNHEGVPQEFH 65
>11_03_0053 + 9339386-9339781
Length = 131
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 100 NAASKPVQSQAQQDHAVAKLDSRTAHRCRAVEHDGTS 210
N S+P Q A +AK D R+ R R++ G S
Sbjct: 34 NFPSQPAQEDAVVVEDIAKTDERSHIRSRSIHRKGRS 70
>09_04_0697 +
19566182-19566851,19567565-19567598,19567677-19567725,
19567891-19567949,19568063-19568079,19568178-19568329,
19568459-19568548,19568793-19568886,19568976-19569127,
19569630-19569727,19570049-19570184,19570695-19570793,
19570898-19571029
Length = 593
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 153 CNSVILLCLALYWFRGSVSLTLLSTFMALG 64
C + L +A Y+F +LT ++T A+G
Sbjct: 26 CRAGCSLAIAAYYFSEGSNLTFIATIFAIG 55
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 71 AMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTERQ 211
A+ + +K++ PRN+ K K+N+I + L+ A S+ +Q
Sbjct: 613 AIKEQSMLKQSSPRNEAKKKYNRIYKKELALSLLLLTAAARSLLSKQ 659
>02_01_0199 +
1341340-1341732,1341990-1342424,1343029-1343584,
1343691-1343989
Length = 560
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 38 DVVFSSDYVPNAMNVLNKVKETLPRN 115
D VF D+VP+A+ L K + T+ +N
Sbjct: 130 DQVFMRDFVPSALAFLMKGEPTIVKN 155
>01_05_0320 - 20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 5 LNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLL 151
+ R +K + S V + DYV A N+ ++ + LPRN + ++ L+
Sbjct: 932 IKRRLKSVHSG--VIALDYVQTARNLADQFTKGLPRNVIDSASREMDLI 978
>12_01_0294 +
2230539-2230870,2232179-2232574,2232676-2232834,
2233109-2233505
Length = 427
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 74 WRWAHSRC*IPR 39
WRW SRC +PR
Sbjct: 100 WRWRPSRCDLPR 111
>11_01_0293 +
2207782-2208148,2208515-2208567,2208622-2208698,
2209377-2209772,2209953-2210111,2210522-2210933
Length = 487
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 74 WRWAHSRC*IPR 39
WRW SRC +PR
Sbjct: 109 WRWRPSRCDLPR 120
>07_03_0950 + 22828787-22828982,22829091-22829164,22829512-22829570,
22830148-22830487,22830623-22833376
Length = 1140
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 87 TKLKKRCLETSTKPSTTRSRCCKT*LENSSSMPCS 191
T KKRC+E+S ++ K+ +E+S S CS
Sbjct: 910 TDSKKRCIESSGLEASLNDSFTKSEVEHSLSDLCS 944
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 163 SRTAHRCRAVEHDGTSDCTI 222
SR+A+ CR + H DC I
Sbjct: 195 SRSANECRFLHHSPLEDCAI 214
>04_01_0101 +
1041755-1041864,1041950-1042102,1042174-1042424,
1042878-1043060,1043163-1043310,1043787-1043958,
1057226-1057366,1057478-1057624
Length = 434
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 14 SIKRLGSSDVVFSSDYVPN--AMNVLNKVKETLPRNQYKAKH 133
++ +G FS +P+ A++V++ V +L R+Q+KA H
Sbjct: 248 NVPSIGKFIADFSESELPSVPALSVISHVMFSLLRSQFKANH 289
>01_07_0226 +
42130300-42131430,42131530-42131715,42133244-42133345,
42133425-42133481,42133563-42133658,42133736-42133828,
42133945-42134064,42134155-42134187,42134266-42134316,
42135129-42135191
Length = 643
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +1
Query: 109 SKPVQSQAQQDHAVAKLDSRTAH-RCRA----VEHDGTSDCTIE 225
SKP + + Q+ K+D T + C + HDGTS TIE
Sbjct: 246 SKPKKKKKQKKRQRRKMDESTENLSCHSGSPSSSHDGTSTSTIE 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,592,047
Number of Sequences: 37544
Number of extensions: 108308
Number of successful extensions: 319
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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