Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n17
(270 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08) 29 0.59
SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 1.4
SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 27 3.1
SB_16643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_20782| Best HMM Match : OGFr_III (HMM E-Value=2.5) 26 4.1
SB_19775| Best HMM Match : Arm (HMM E-Value=0.27) 26 4.1
SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_13135| Best HMM Match : OGFr_III (HMM E-Value=2.5) 26 4.1
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 26 5.5
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 26 5.5
SB_52739| Best HMM Match : GCV_H (HMM E-Value=2) 25 7.2
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_33681| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_21792| Best HMM Match : DUF1612 (HMM E-Value=5.1) 25 7.2
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 25 7.2
SB_29914| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13) 25 7.2
SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07) 25 7.2
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 25 7.2
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0) 25 9.5
SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_872| Best HMM Match : CUB (HMM E-Value=3.1e-07) 25 9.5
>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
Length = 410
Score = 29.1 bits (62), Expect = 0.59
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = -3
Query: 94 NFVK--HVHGVGHIVAAKYHVGRTQ 26
N+ K H+HGV ++AAKY +G+TQ
Sbjct: 19 NYAKDNHMHGV-RVIAAKYGIGKTQ 42
>SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1
Query: 258 NKVFYYKLKLLFNRAI*RSVMLDCTASMSCSRVKFCNSVILLCLALYWFRGSVSLTL 88
N VF LK +F R RS++L C S ++ + NSV+ + F+G ++ +
Sbjct: 503 NVVFLDFLKPIFTRLTDRSLLLRCLPGFSQNQNECLNSVVWTKAPKHKFKGPKAIEM 559
>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 5 LNRSIKRLGSSDVVFSSDYVPNAMN--VLNKVKETLPRNQYKAKHNKITLLQNLTREQLI 178
L + KR+G + D++ +++ +LN +K+ + + +A+ + + QNL+RE +
Sbjct: 936 LRNAFKRMGLP-ISLIPDHIDGSLSATILNYLKKIKQQGKIEAERMVVLVTQNLSREN-V 993
Query: 179 DAVQSSMTERQI 214
VQ S + Q+
Sbjct: 994 GRVQPSNVQLQL 1005
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 123 LYWFRGSVSLTLLSTFMALGT*SLLNTTSDEPKRLML 13
LYW G+ + STF ++L + D+P+ L L
Sbjct: 1951 LYWIEGNSQTIMRSTFNGSAVQTVLRSGMDDPRSLAL 1987
>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/58 (25%), Positives = 22/58 (37%)
Frame = +2
Query: 29 GSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMT 202
G ++ F + L K + P YK+ NLT E L Q+S+T
Sbjct: 14 GFANAAFDQGEENRTLAFLEKYNQVAPNEAYKSSEASWNYATNLTVENLNKRTQASLT 71
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 11 RSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLI 178
R+++R G++ ++F + VP+A+ LN +++ R K L N+ + Q +
Sbjct: 91 RAMQR-GATAIIFDTTDVPDAVEELNSIEDQAVRPVVLIKGPDAKKLMNILKNQKV 145
>SB_16643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 84 LTKLKKRCLETSTKPSTTRSRCCKT 158
+TK KK L +ST+P +R C T
Sbjct: 136 VTKAKKPALSSSTRPKRLSARVCAT 160
>SB_20782| Best HMM Match : OGFr_III (HMM E-Value=2.5)
Length = 251
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 89 KVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTERQIA 217
KVK L RNQY + + +LQ L R+ I + E A
Sbjct: 81 KVKLVLKRNQYFVESSHADVLQALLRDSKIQQCRKRAAEEDEA 123
>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
Length = 607
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 98 ETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTERQI 214
+TL + + K + ++ LQN +QL+ +QSS +Q+
Sbjct: 421 DTLQADDGELKDDDMSRLQNSKAQQLLQGIQSSDESQQL 459
>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 252 VFYYKLKLLFNRAI*RSVMLDCTASMSCSRVKFCNSVILLCLALYWFRGSVSLTL 88
VF LK +F R RS++L C S ++ + NSV+ + F+G ++ +
Sbjct: 556 VFLDFLKPIFTRLSDRSLLLRCLPGFSQNQNECLNSVVWTKAPKHKFKGPKAIEM 610
>SB_13135| Best HMM Match : OGFr_III (HMM E-Value=2.5)
Length = 166
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 89 KVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTERQIA 217
KVK L RNQY + + +LQ L R+ I + E A
Sbjct: 33 KVKLVLKRNQYFVESSHADVLQALLRDSKIQQCRKRAAEEDEA 75
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -3
Query: 115 VSRQRFFNFVKH--VHGVGHIVAAKYHVGRTQ 26
++R+ N+ K HGV ++AAKY +G+TQ
Sbjct: 11 LNRKIELNYAKDNPTHGV-RVIAAKYGIGKTQ 41
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 9 TVALNAWVRPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSR 146
T+A A V P +A P T + LET+ P TT +R
Sbjct: 540 TIAPEATVAPETTMAPETTAAPVTTMAPETTAALETTMAPETTAAR 585
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +3
Query: 9 TVALNAWVRPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTT 137
T AL V P LAA P T LT ET+ P TT
Sbjct: 1487 TAALETTVAPESTLAAETTAVPETTLTPGTTVAQETTAAPETT 1529
>SB_52739| Best HMM Match : GCV_H (HMM E-Value=2)
Length = 561
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 175 HRCRAVEHDGTSDC 216
+RC AV H+GT +C
Sbjct: 511 NRCLAVRHEGTGEC 524
>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 21 NAWVRPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCK 155
NA + + A CP +CL L+ RC E T P S+C K
Sbjct: 219 NARIDESLIPVAYRCPIESSCLGGLESRCREGYTGPLC--SQCVK 261
>SB_33681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 198 MLDCTASMSCSRVKFCNSVI 139
+LDC +C R +F NSV+
Sbjct: 97 LLDCEPEKNCVRKEFANSVV 116
>SB_21792| Best HMM Match : DUF1612 (HMM E-Value=5.1)
Length = 273
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 113 NQYKAKHNKITLLQNLTREQLIDAVQSSMTERQ 211
N YK + + L+ QL++A+Q ++TERQ
Sbjct: 225 NTYKHANAHLCLIYYARYLQLMEAMQENITERQ 257
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 201 VMLDCTASMSCSRVKFCNSVILLCLALYWFRGSV 100
V L SC RV C SVI + L +R ++
Sbjct: 700 VSLSIVGKSSCCRVSLCGSVINMFSVLLLYRRAI 733
>SB_29914| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13)
Length = 184
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 92 VKETLPRNQYKAKHNKITLLQNLTREQ 172
+ + L R ++ +KH+K+T+LQ E+
Sbjct: 109 ISDRLIRARFNSKHSKLTILQCYAEEE 135
>SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)
Length = 1055
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 270 FFFWNKVFYYKLKLLFNRAI 211
F+FWN VFY ++ +RA+
Sbjct: 181 FWFWNHVFYEQVHSFCSRAL 200
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 208 TFRHARLHGIDELFSSQVLQQRD-LVVLGFVLVSRQRFFNFVKHVHGVGHIVAAKYHVG 35
T H +H + F Q + RD + + + + + FNF K+ HG + A Y G
Sbjct: 148 TAMHELMHTLG-FFHEQSRRDRDNYITIHWDNIQSDKQFNFQKYEHGKVDTLGAPYDYG 205
>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
Length = 1243
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +3
Query: 105 CLETSTKPSTTRSRCCKT*LENSSSMPCSRA*RNVRLH 218
CL T T S T SR CK L S C R R LH
Sbjct: 1164 CL-TRTNNSFTPSRLCKAALFESFKELCQRTDREDLLH 1200
>SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +2
Query: 2 SLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLID 181
++ +IK GS +F+ P N+L++ P+N K N I +Q +E+ D
Sbjct: 88 AITNAIKGQGSLSQLFNPTSKP--YNILSRPGSAQPKNFTKENVNHIKKIQKANKEKQKD 145
>SB_872| Best HMM Match : CUB (HMM E-Value=3.1e-07)
Length = 423
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 30 VRPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCKT*LENSSSMPCSR 194
+RP +Y + T T LT L+ CL S TRSR T + C R
Sbjct: 49 MRPIFY---EIYSTDSTLLTSLESPCLNYRMLKSKTRSRTHVTKQSSDGDAECDR 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,834,409
Number of Sequences: 59808
Number of extensions: 133296
Number of successful extensions: 463
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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