Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n17
         (270 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    28   0.79 
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    28   0.79 
AC024791-5|AAF60661.2|  468|Caenorhabditis elegans Hypothetical ...    28   1.0  
AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical ...    26   3.2  
AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical...    26   3.2  
AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8 prot...    26   3.2  
Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z48544-1|CAA88435.1|  473|Caenorhabditis elegans Hypothetical pr...    25   9.7  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      25   9.7  
U49956-8|AAA93436.1|  765|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U46674-3|AAA85755.1|  301|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical...    25   9.7  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    25   9.7  
AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -1

Query: 231 LLFNRAI*RSVMLDCTASMSCSRVKFCNSVILLCLALYWFRGSVSLTLLSTFMAL 67
           L+FN  +  S+ L   A +    +KF  SV     +    +G +SLTL +T MAL
Sbjct: 207 LMFNTFLWVSICLGINAVLIVKLIKFKLSVPSTMRSQLSQKGEISLTLTTTSMAL 261


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 62  VPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLT 163
           +PN    + K+ E+ P + Y+AK N +T  ++++
Sbjct: 383 IPNPTRKVMKILESFPYDVYEAKRNMLTYAESIS 416


>AC024791-5|AAF60661.2|  468|Caenorhabditis elegans Hypothetical
           protein Y47G6A.14 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 57  TMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCKT*LE 167
           T C  P   + +L   C E  TK +  R RCCKT +E
Sbjct: 273 TKCQEPVEKIFELT--CSECMTKQTVERFRCCKTCIE 307


>AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 59  YVPNAMNVLNKVKETLPRNQYKAKH 133
           Y+ N  NVLN  ++  P   YK +H
Sbjct: 133 YLSNEQNVLNNGRKIFPALNYKVEH 157


>AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 59  YVPNAMNVLNKVKETLPRNQYKAKH 133
           Y+ N  NVLN  ++  P   YK +H
Sbjct: 133 YLSNEQNVLNNGRKIFPALNYKVEH 157


>AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8
           protein.
          Length = 507

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 59  YVPNAMNVLNKVKETLPRNQYKAKH 133
           Y+ N  NVLN  ++  P   YK +H
Sbjct: 133 YLSNEQNVLNNGRKIFPALNYKVEH 157


>Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 62  VPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSS 196
           VP +   L+ VK  L   +Y+  +  ITL  + T E LID ++ +
Sbjct: 193 VPQSELDLDLVKSILA--EYRIHNADITLRYDATSEDLIDVIEGN 235


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 33  RPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCKT 158
           +PT    AT   +  T  T+       T+T PSTT S   KT
Sbjct: 522 KPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKT 563


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 33  RPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCKT 158
           +PT    AT   +  T  T+       T+T PSTT S   KT
Sbjct: 363 KPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKT 404


>Z48544-1|CAA88435.1|  473|Caenorhabditis elegans Hypothetical
           protein ZK945.1 protein.
          Length = 473

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 208 TFRHARLHGIDELFSSQVLQQRDLVVLGFVLVSRQRFFN 92
           TF +  LH ++++ +  + + RDL  L F LV + + F+
Sbjct: 324 TFNNPTLHAMEQVAALGITKSRDLARL-FSLVQQGKLFS 361


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 33  RPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCKT 158
           +PT    AT   +  T  T+       T+T PSTT S   KT
Sbjct: 403 KPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKT 444


>U49956-8|AAA93436.1|  765|Caenorhabditis elegans Hypothetical
           protein M03A1.6a protein.
          Length = 765

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 53  SDYVPNAMNVLNKVKETLPRN 115
           S  VPNA  +LN + ET  RN
Sbjct: 28  SKSVPNARKILNDLVETTERN 48


>U46674-3|AAA85755.1|  301|Caenorhabditis elegans Hypothetical
           protein T26A8.2 protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 264 FWNKVFYYKLKLLFNRAI*RSVMLDCTASMSCSRVKFCNSVI 139
           FW  + ++ ++ L +  I   V   CT+ M  +RV + N V+
Sbjct: 259 FWELLKWFWIQYLASFTIVDYVFTSCTSYMFRNRVFYVNDVV 300


>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
           protein B0416.1 protein.
          Length = 1203

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 65  PNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTERQ 211
           PN  ++L K+++  PRN  + +  ++ +L  L    LI ++   +   Q
Sbjct: 419 PNIFDLLGKIEKLHPRNALRFQLGRVLVLYILNYYTLIYSLMLQLEHLQ 467


>AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 62  VPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSS 196
           VP +   L+ VK  L   +Y+  +  ITL  + T E LID ++ +
Sbjct: 193 VPQSELDLDLVKSILA--EYRIHNADITLRYDATSEDLIDVIEGN 235


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 193 RLHGI-DELFSSQVLQQRDLVVLGFVLVSRQRFFNFVKH 80
           ++H I DEL   + ++++DL V+   +V+ +   N  KH
Sbjct: 287 KIHAILDELVRQKKIKKKDLGVIYLNIVNNENIKNTPKH 325


>AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical
           protein K10F12.4a protein.
          Length = 309

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 41  VVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLT 163
           VV+ S+ +   ++ L      LPR+ Y+  H KI L++ L+
Sbjct: 156 VVWESNVIVEYLDELFPTNTILPRDAYEKAHQKI-LVERLS 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,738,349
Number of Sequences: 27780
Number of extensions: 96847
Number of successful extensions: 338
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)