Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n15
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               224   4e-59
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     33   0.16 
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   31   0.64 
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   3.4  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.4  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.4  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   6.0  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   6.0  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   6.0  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   6.0  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   7.9  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   7.9  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              28   7.9  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  224 bits (548), Expect = 4e-59
 Identities = 106/188 (56%), Positives = 130/188 (69%)
 Frame = +2

Query: 104 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 283
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 284 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 463
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH          
Sbjct: 60  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRF 119

Query: 464 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 643
                           ARGH IEKI E+PLV++D ++ + KT  AV  L+ + A+ D+ K
Sbjct: 120 AVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEK 179

Query: 644 VYKSQRLR 667
              S+++R
Sbjct: 180 CIDSKKIR 187


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 377 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 264
           Y +HP  T+ YH H      R H Q+P + H +  Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268



 Score = 32.7 bits (71), Expect = 0.28
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 377 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 270
           Y +HP  T+ YHH  H +   ++ Q+P + H +  Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 368 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQP 267
           HP  T+ YH H      R H Q+P + H +   P
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQHP 438


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 392 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 279
           HH  CY  H    Y Y+ H H  + R H  YP  +H++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 392 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 309
           HH     RH  R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 401 TYVHHDTCYRRHPDRTYEYHHHGHA 327
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -1

Query: 404 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 300
           R + HH   +  H    + +HHH H      H  +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 281  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 397
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 200  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 325
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 299 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 427
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 392 HHDTCYRRHPDRTYEYHHH 336
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 171  GRGLAAPCTVSLFSEYTDTKGRATDRLI 88
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 194 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 316
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 398 YVHHDTCYRRHPDRTYEYHHHGH 330
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 392 HHDTCYRRHPDRTYEYHHH 336
           HH   + RH  R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 392 HHDTCYRRHPDRTYEYHHHGH 330
           HH   + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 380 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 285
           CY +  +  + YHHH H      H Q+    H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 296 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 427
           WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 24  WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,711,909
Number of Sequences: 59808
Number of extensions: 428114
Number of successful extensions: 1363
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)