Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n14
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38) 29 2.8
SB_24697| Best HMM Match : Filament (HMM E-Value=0.11) 29 3.6
SB_10704| Best HMM Match : LMP (HMM E-Value=1.2) 29 3.6
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 28 6.4
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07) 28 6.4
SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 28 8.4
SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 32.3 bits (70), Expect = 0.39
Identities = 30/100 (30%), Positives = 50/100 (50%)
Frame = -1
Query: 691 AITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNF 512
A TS A ++ +AS A + A S ++SAS + I S S +SAK++ A+ +
Sbjct: 29 AKTSSASASSNIASSASASSASMSSSSSLSASASSNIASSDIASSANASSAKTSSASASS 88
Query: 511 CVRSSILAITSFVSISTAGAYLPVHST*GMTSSKSHSCNS 392
+ SS A S S+S+A + S+ +S + S N+
Sbjct: 89 NIASS--ASASSASMSSASSLSASASSNIASSDIASSANA 126
Score = 32.3 bits (70), Expect = 0.39
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = -1
Query: 691 AITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNF 512
A TS A ++ +AS A + A S ++SAS + I S S +SAK++ A+ +
Sbjct: 79 AKTSSASASSNIASSASASSASMSSASSLSASASSNIASSDIASSANASSAKTSSASASS 138
Query: 511 CVRSSILAITSFVSISTAGA 452
+ SS A + S + A +
Sbjct: 139 NIASSASASSDVASSAIASS 158
>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1401
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 492 KIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMAD 671
K +T+KLT A++ + L+ ++ R+D++ E RE L +R+AD
Sbjct: 1147 KTRGMTEKLTQITAEVDLKKKELLEAEQSLVKVRKDSDGVMTSVEERTRELKSLESRLAD 1206
>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +3
Query: 465 EMDTNDVIAKIDDLTQKL---TVANADLAEANRSLILFANEMIVARRDAETARQDCENAR 635
+ + +D+ K+DDL QKL DL +R + + E+ + R E R + ++
Sbjct: 93 DAEVSDLKIKLDDLQQKLKQEKQIQEDLQGHSRQVKMLTKELEILRAHEEKTRSELQSTE 152
Query: 636 RETAQLANRM 665
++L ++
Sbjct: 153 GNASELEKKL 162
>SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)
Length = 510
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 534 DLAEANRSLI-LFANEMIVARRDAETARQDCENARRETAQLAN 659
D+ E+ RS I LFA++ I R +R+DCE RR+ ++LA+
Sbjct: 261 DIQESVRSEIRLFADDCICYR--TIRSREDCEELRRDISRLAS 301
>SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)
Length = 266
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/77 (20%), Positives = 33/77 (42%)
Frame = +3
Query: 465 EMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRET 644
E ND+ A++ L QKL +L + + L+ +E + + R D + R++
Sbjct: 180 EQARNDLQAQVHSLQQKLNSLEDELDRSQKERALYESEANDLNQTSMKHRDDATSTRKQV 239
Query: 645 AQLANRMADIAQDVIAK 695
+L + + + K
Sbjct: 240 MELQGVIDSLRSSIAEK 256
>SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)
Length = 208
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 471 DTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQ 650
D + V + D ++ +LA + AN++ R D D + R +T+Q
Sbjct: 22 DISQVANNLADNRLDISQVGNNLANNRLDISQVANDLADNRPDTSQVANDLADNRPDTSQ 81
Query: 651 LANRMAD 671
+AN +AD
Sbjct: 82 VANDLAD 88
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 471 DTNDVIAKIDD-LTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETA 647
D + V +D+ K VAN DLA+ + AN++ R D + + R E
Sbjct: 120 DISQVANDLDNNRPHKSRVAN-DLADNRSDISQVANDLADNRPDISQVSNNLADNRLEEL 178
Query: 648 QLANRMADIAQDV 686
Q+AN + D D+
Sbjct: 179 QVANNLTDNRPDI 191
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = -1
Query: 676 AMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSS 497
A ++ +AS A + A S ++SAS + I S S +SAK++ A+ + + SS
Sbjct: 340 ASASSAIASSASASSASMSSASSLSASASSNIASSDIASSANASSAKTSSASASSNIASS 399
Query: 496 ILAITSFVSISTAGA 452
A + S + A +
Sbjct: 400 ASASSDVASSAIASS 414
>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 510 QKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARR 638
+K+ A A L EA + L + I R+D ++ +DCEN R
Sbjct: 5 EKVDPAEA-LLEAQQELATLQRQYICLRKDKKSYTEDCENVIR 46
>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
Length = 1213
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 703 LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVS 602
LLGL ++ SAM + C +S R Q CR +S
Sbjct: 469 LLGLELSDELESAMWICPCTISIRTGMQRCRWIS 502
>SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 534 DLAEANRSLI-LFANEMIVARRDAETARQDCENARRETAQLAN 659
D+ E+ RS I LFA++ I R +R+DCE +R+ ++LA+
Sbjct: 662 DIQESVRSEIRLFADDCICYR--TIRSREDCEELQRDISRLAS 702
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +3
Query: 462 VEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRE 641
+E + +I++ KL ADL + + ++ EM + + + E +RE
Sbjct: 1478 LEKKQKKIDIQINEWRVKLEEVQADLDNSQKEARNYSTEMYKIKAAFDEQSEQVEALKRE 1537
Query: 642 TAQLANRMADIAQDV 686
LA+ + D+A +
Sbjct: 1538 NKSLASEVNDLADQL 1552
>SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1029
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 646 AVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRS 500
A + F CRA SA+ RAT+ NK + A+ S +++VN R+
Sbjct: 922 AAADEGFDLECRANSATVRATV--CLNKDMGKTAAQISVMSSVNLSSRA 968
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,793,755
Number of Sequences: 59808
Number of extensions: 546308
Number of successful extensions: 1409
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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