Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n13
(283 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.33
SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 0.44
SB_20189| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.58
SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061) 29 0.58
SB_59790| Best HMM Match : VWA (HMM E-Value=0) 27 1.8
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29) 27 1.8
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29) 26 4.1
SB_17765| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-16) 26 4.1
SB_44461| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94) 25 7.1
SB_34313| Best HMM Match : TLD (HMM E-Value=0.00057) 25 7.1
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001) 25 7.1
SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93) 25 7.1
SB_36340| Best HMM Match : eRF1_3 (HMM E-Value=3.8) 25 7.1
SB_10639| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_37981| Best HMM Match : DUF283 (HMM E-Value=9.7) 25 9.4
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09) 25 9.4
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 136 DQTRKTYAVPWNCNNIFHCNYYNVPLFVVNCPENTAYSYVSDGC 5
D+T Y P NC+ ++ C+ ++ F+ +CP ++ + C
Sbjct: 1456 DKTSDYYHDPRNCSRLYQCDIFH-RAFLKSCPHGLKWNIEKNAC 1498
>SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 834
Score = 29.5 bits (63), Expect = 0.44
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -2
Query: 123 KHTLCRGIVTIYFIAIITMFLCLSSTVPKT 34
+H+LC I+ +++ + +TM LC S+ + +T
Sbjct: 320 EHSLCIAIIHLFYTSELTMSLCCSAGIGRT 349
>SB_20189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 77 IAMKYIVTIPRHSVCFSSLISFTQRPKKICQCF 175
+A KY T P S CF L +F + K+ +CF
Sbjct: 202 VASKYRATPPGTSTCFERLKTFVGQTLKLEECF 234
>SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)
Length = 1445
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 77 IAMKYIVTIPRHSVCFSSLISFTQRPKKICQCF 175
+A KY T P S CF L +F + K+ +CF
Sbjct: 216 VASKYRATPPGTSTCFERLKTFVGQTLKLEECF 248
>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
Length = 4151
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 53 DKQRNIVIIAMKYIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYIRRK 199
D +R+I I A + H + F ++FT P + Q + C Y R +
Sbjct: 2841 DTRRSITIAAWINVRAGSGHILSFGRGVAFTVTPTTVRQTYNCTYSRNR 2889
>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
Length = 1890
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 124 KTYAVPWNCNNIFHCNYYNVPL 59
KTYA P NCN CN++ V +
Sbjct: 1861 KTYAPPDNCNVGKSCNFFTVKI 1882
>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
Length = 551
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 61 KEHCNNCNEIYCYNSTAQ 114
K HC NC I+C + T++
Sbjct: 374 KHHCRNCGLIFCSDCTSK 391
>SB_17765| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-16)
Length = 424
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 65 NIVIIAMKYIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYIRRKIHRFAQRL 223
NIV++ + +++ + S C+ ++ F R + + F+CI + F + L
Sbjct: 188 NIVLLIVGFVIPVGIISACYLNIFRFL-RSQPVPPAFICIVFSTLVIMFPRFL 239
>SB_44461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +2
Query: 23 RIRRVF--GTVDDKQRNIVIIAMKYIVTIPRHSV 118
R+R++ G +DDK + +II ++Y+ T+P+ ++
Sbjct: 37 RVRKLSADGFIDDKTLDYLIINVRYMGTLPQGAI 70
>SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)
Length = 472
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +2
Query: 5 TTIANIRIRRVF--GTVDDKQRNIVIIAMKYIVTIPRHSV 118
T + N R+R++ G +DDK + +II ++ + T+P+ ++
Sbjct: 76 TELVNRRVRKLSADGFIDDKTLDYLIINVRDMGTLPQGAI 115
>SB_34313| Best HMM Match : TLD (HMM E-Value=0.00057)
Length = 170
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 124 KTYAVPWNCNNIFHCNYY 71
KTYA P NCN CN++
Sbjct: 151 KTYAPPDNCNVGKSCNFF 168
>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
Length = 909
Score = 25.4 bits (53), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 64 EHCNNCNEIYC 96
EHC NC ++YC
Sbjct: 10 EHCQNCFKLYC 20
>SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93)
Length = 1104
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -1
Query: 85 HCNYYNVPLFVVNCPENTAYSYVSDGC 5
+ N + + +CP+ Y Y+SD C
Sbjct: 893 NANVHRADVMDTDCPKTAYYGYLSDTC 919
>SB_36340| Best HMM Match : eRF1_3 (HMM E-Value=3.8)
Length = 100
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +2
Query: 5 TTIANIRIRRVF--GTVDDKQRNIVIIAMKYIVTIPRHSV 118
T + N R+R++ G +DDK + +II ++ + T+P+ ++
Sbjct: 31 TELVNRRVRKLSADGFIDDKTLDYLIINVRDMGTLPQGAI 70
>SB_10639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 110 HSVCFSSLISFTQRPKKICQCFV 178
++V F+ L SFT R +IC+ F+
Sbjct: 218 NNVRFAGLTSFTDRRAQICERFI 240
>SB_37981| Best HMM Match : DUF283 (HMM E-Value=9.7)
Length = 113
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 162 IFLGRCVKLIKLEKHTLCRGIVTIYFIAIITMFLCLSSTVPKTRRIR 22
I+L RC KL+ +E L I I + L S+ +TR +R
Sbjct: 6 IYLDRCTKLLAVEVSPLDEPITVKLVNCKIDSDITLGSSPVRTRELR 52
>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
Length = 666
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 99 VTIYFIAIITMFLCLSSTVPKTRRIRM 19
V I+F A+ T+F LS VPK + +++
Sbjct: 402 VFIHFYALQTLFTRLSPAVPKYKGVQL 428
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,357,157
Number of Sequences: 59808
Number of extensions: 130882
Number of successful extensions: 386
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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