Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n13
         (283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    28   0.90 
Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    27   2.7  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    26   3.6  
U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    26   4.8  
Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical pr...    25   6.3  
AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite indu...    25   6.3  
Z93383-10|CAB07632.1|  286|Caenorhabditis elegans Hypothetical p...    25   8.4  
Z92786-5|CAB07207.1|  262|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U64835-2|AAO25998.1|  337|Caenorhabditis elegans Serpentine rece...    25   8.4  
AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral signa...    25   8.4  
AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical...    25   8.4  

>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 89  YIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 202
           ++VT  ++ +CFS+L +       I   +VCI I RRKI
Sbjct: 172 HVVTGTKNILCFSALYTILHMTIPITPVYVCILILRRKI 210


>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 61  KEHCNNCNEIYCYNSTAQR 117
           K HC NC +I+C  ST  R
Sbjct: 882 KHHCRNCGQIFC--STCSR 898


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 61  KEHCNNCNEIYCYNSTAQR 117
           K HC NC +I+C  ST  R
Sbjct: 882 KHHCRNCGQIFC--STCSR 898


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 167 QCFVCIYIRRKIHRF 211
           QC VC Y R+K  RF
Sbjct: 383 QCMVCCYFRKKARRF 397


>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 107 RHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 202
           ++ +CFS+L +       I   ++CI I RRKI
Sbjct: 178 KNIICFSALFTILHMTLPITPVYICILILRRKI 210


>Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical
           protein F58E10.4 protein.
          Length = 202

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -1

Query: 211 KPMYFPSNINTNKALTDFLRPLCETDQTRKTYA 113
           KP+  P ++N ++ + + ++  C+T +  K Y+
Sbjct: 63  KPVPTPKDVNVDQQVNEHIQNNCQTPKRAKVYS 95


>AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite
           inducible RNA associatedprotein (aip-1) protein.
          Length = 229

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -1

Query: 211 KPMYFPSNINTNKALTDFLRPLCETDQTRKTYA 113
           KP+  P ++N ++ + + ++  C+T +  K Y+
Sbjct: 90  KPVPTPKDVNVDQQVNEHIQNNCQTPKRAKVYS 122


>Z93383-10|CAB07632.1|  286|Caenorhabditis elegans Hypothetical
           protein F54B8.11 protein.
          Length = 286

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 91  IFHCNYYNVPLFVVNCP 41
           IFH N   +P+F++ CP
Sbjct: 115 IFHNNRRKIPIFLIICP 131


>Z92786-5|CAB07207.1|  262|Caenorhabditis elegans Hypothetical
           protein F47H4.8 protein.
          Length = 262

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 52  RQTKEHCNNC-NEI-YCYNSTAQRMFFEFDQFHTTA*ENLSMLCLYLY*KEN 201
           RQT +  +N  N +  C+     R+FF    FH T+  N   + L L+ KE+
Sbjct: 142 RQTIDEQDNLFNTLGICFEDDKTRIFFNEKTFHYTSVGNECRITLDLFTKED 193


>Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical
           protein C34B4.5 protein.
          Length = 348

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 59  QRNIVIIAMKYIVTIPRHSVCFSSLISFTQR 151
           Q N+ +I M Y++    HS+ FS+ +   QR
Sbjct: 115 QTNLYLI-MSYVIDFCLHSILFSNFVMAIQR 144


>U64835-2|AAO25998.1|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 29 protein.
          Length = 337

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 114 LCRGIVTIYFIAIITMFLCLSSTV 43
           L  GI+TIYF+   T F  L+S V
Sbjct: 70  LADGIITIYFLVSDTSFFRLNSYV 93


>AF099001-6|AAC68738.2|  661|Caenorhabditis elegans Lateral
           signaling target protein 2 protein.
          Length = 661

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 61  KEHCNNCNEIYCY 99
           + HC NC  I+C+
Sbjct: 585 RHHCRNCGRIFCH 597


>AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.2 protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 70  CNNCNEIYCYNS 105
           CN+CNEI+ +N+
Sbjct: 166 CNHCNEIFLFNT 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,560,255
Number of Sequences: 27780
Number of extensions: 104996
Number of successful extensions: 362
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)