Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n13
         (283 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   0.71 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   2.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   3.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   5.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   5.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   6.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   8.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   8.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    19   8.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 0.71
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 145 CETDQTRKTYAVPWNCNNIFHCNYYNV 65
           CE  Q +K  A    C + F+C  Y +
Sbjct: 591 CEVGQAKKYVAGEQCCWHCFNCTQYQI 617


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 95  QYISLQLLQCSFVCRQLSRKHGVFV 21
           Q +SL  +Q      ++ RKH VFV
Sbjct: 255 QSLSLTNIQLEHFEMKIKRKHNVFV 279



 Score = 19.4 bits (38), Expect = 8.8
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -2

Query: 102 IVTIYFIAIITMFLCLSSTVPKTRRI 25
           ++T +   +IT  +C S  V +T  +
Sbjct: 131 LITGWSAVVITAAICTSGIVGRTHTV 156


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 35  VFGTVDDKQRNIVIIAMK 88
           + G VDD QRN  ++  K
Sbjct: 112 LLGIVDDYQRNPSVVGRK 129


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 90  YFIAIITMFLCLSSTVPKT 34
           +FI I T  + L + VP T
Sbjct: 413 FFIVIFTYIIILITLVPST 431


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 123 KHTLCRGIVTIYFIAI 76
           K+  C GI ++Y IAI
Sbjct: 115 KNQNCSGITSVYRIAI 130


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 97  YNSTAQRMFFEFDQFHTT 150
           Y+S AQ+ F   D F  T
Sbjct: 522 YSSVAQQQFLPHDDFLET 539


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
          protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 93 IYFIAIITMFLCLSSTV 43
          ++   I   FLCL+ST+
Sbjct: 6  VFTTLINAAFLCLASTI 22


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 111 CRGIVTIYFIAI 76
           C GIV+ Y IAI
Sbjct: 122 CSGIVSAYKIAI 133


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 111 CRGIVTIYFIAI 76
           C GIV+ Y IAI
Sbjct: 122 CSGIVSAYKIAI 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,082
Number of Sequences: 438
Number of extensions: 1205
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)