Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n12
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   0.86 
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    24   0.86 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   2.0  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   3.5  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   3.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.0  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -1

Query: 342 FLVRFQTKALVVVTCCRTNWTMQTLCCDPNAIASTAHFCFVPWW 211
           +L   Q    V  TC R+N+    L    N I       FV +W
Sbjct: 17  YLQHNQIFGFVTFTCTRSNFRSSKLLILYNIILQVLFVSFVSYW 60


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -1

Query: 342 FLVRFQTKALVVVTCCRTNWTMQTLCCDPNAIASTAHFCFVPWW 211
           +L   Q    V  TC R+N+    L    N I       FV +W
Sbjct: 35  YLQHNQIFGFVTFTCTRSNFRSSKLLILYNIILQVLFVSFVSYW 78


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 163 FIQNLWIVQRFYVSKR 210
           FI+N+W+   F+V+++
Sbjct: 118 FIKNIWVPDTFFVNEK 133


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 576 HASAPRSCLGNCTDILFPPESTFR 505
           H   PR  L    DIL  P STFR
Sbjct: 105 HKYQPRFHLVRANDILKLPYSTFR 128


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 576 HASAPRSCLGNCTDILFPPESTFR 505
           H   PR  L    DIL  P STFR
Sbjct: 96  HKYQPRFHLVRANDILKLPYSTFR 119


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 332 VSKQKRWSL 306
           VSKQKRW L
Sbjct: 268 VSKQKRWEL 276


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 283 PIRPATCYNDQR 318
           P+RPA C  D R
Sbjct: 138 PVRPAACTPDSR 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,381
Number of Sequences: 336
Number of extensions: 3167
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)