Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n12
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0846 - 7920960-7921112,7921247-7921373,7921455-7921585,792...    31   0.93 
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805...    31   0.93 
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222...    30   1.6  
08_01_0242 - 2007601-2007677,2007792-2007843,2008117-2008188,200...    28   6.5  
01_06_1527 - 38006174-38006815,38006920-38007420                       28   6.5  
06_02_0207 + 13017538-13017670,13019486-13019658,13020754-130208...    27   8.7  

>12_01_0846 -
           7920960-7921112,7921247-7921373,7921455-7921585,
           7921992-7922033,7922126-7922167,7922416-7922508,
           7922590-7922685,7923281-7923448,7923519-7923594,
           7923687-7923766,7923855-7923950,7924023-7924392,
           7925356-7925431,7925559-7925649
          Length = 546

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 199 VSKRPPGDKAKMSCGRYCVWIAAQRLHRPIRP 294
           +S++PPG+K     GR C  I  Q+ + P+ P
Sbjct: 429 ISRKPPGEKHGDRIGRICTHILKQQSYYPLYP 460


>02_05_1337 -
           35780076-35780290,35780377-35780408,35780490-35780584,
           35780670-35780743,35780851-35780986,35781072-35781135,
           35781333-35781395,35781514-35781656,35781752-35781889,
           35781973-35782094,35782210-35782375,35782647-35782652,
           35782988-35783059,35783241-35783348,35783719-35783848,
           35783964-35784070,35784896-35785005,35785302-35785435,
           35785528-35785982,35786068-35786595
          Length = 965

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 153 NKDIHPKPLDRAEILRVEKATRG 221
           N DIH +PL  AE ++++KA RG
Sbjct: 394 NSDIHSRPLSDAERVKIKKALRG 416


>12_02_0932 +
           24519204-24519380,24520074-24520128,24520251-24522202,
           24522288-24522446,24522878-24523049,24523131-24523429,
           24524037-24524285
          Length = 1020

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -1

Query: 321 KALVV-VTCCRTNWTMQTLCCDPNAIASTAHFCFVPWWPFRHVKSLHDPKVLDEYLCLNA 145
           KALV  +  C T  +  T+C D     +T H   V      ++K +++PK   + LC   
Sbjct: 435 KALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICGNIKEVNNPKNASD-LCSEL 493

Query: 144 NETTALDSTRSFSHN 100
            ET       S  +N
Sbjct: 494 PETVVKTLLESIFNN 508


>08_01_0242 -
           2007601-2007677,2007792-2007843,2008117-2008188,
           2008710-2009219
          Length = 236

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 537 DILFPPESTFRRREKNTHRAKRRANPTS*RTCRNPK 430
           D++ P     RRREK   + +RR +P + R  R+P+
Sbjct: 27  DVIGPWWIERRRREKEREKRRRRRSPAARRGTRSPE 62


>01_06_1527 - 38006174-38006815,38006920-38007420
          Length = 380

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 573 ASAPRSCLGNCTDILFPPESTFRRR 499
           A+ PR C    T+ILFP  + +R R
Sbjct: 39  ATGPRRCCSTYTNILFPSTTVYRYR 63


>06_02_0207 +
           13017538-13017670,13019486-13019658,13020754-13020845,
           13022213-13022271,13022659-13022759,13023907-13023988,
           13024092-13024321
          Length = 289

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 388 SRMWSNMMPLVSLT*LSCAFPNKSAGRCNMLPDELDDADAVLRSKRNSVHSS 233
           +R   +M+   ++  +  A  NKSA RCN LP        +LR+K NS+  S
Sbjct: 128 NRAIHSMLQHTNILCVGIAMSNKSAERCNDLP---MPCSQILRAKVNSLSFS 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,994
Number of Sequences: 37544
Number of extensions: 359965
Number of successful extensions: 987
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)