Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n12
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48734| Best HMM Match : DUF237 (HMM E-Value=5.2) 33 0.18
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 30 1.7
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06) 29 2.9
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_51003| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.1
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12) 28 5.1
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_28641| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_2139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_34486| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03) 27 8.8
SB_29592| Best HMM Match : DUF1528 (HMM E-Value=6.8) 27 8.8
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 27 8.8
SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_23201| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.8
>SB_48734| Best HMM Match : DUF237 (HMM E-Value=5.2)
Length = 407
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 426 TVLDCGMFFS-SLGLHAASPDAYFSLADGTWIPV-EIKCPYNYRDTTVEQ 569
+V DCG + + ASPD + D I + EIKCPY +R+TT+ +
Sbjct: 329 SVADCGFYINVKWPFLGASPDGLV-MCDCCGIGLCEIKCPYKHRNTTIAE 377
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 516 STFRRREKNTHRAKRRANPTS*RTCRNPKPFQRPR 412
ST RR K+THR K+ + R KP +RPR
Sbjct: 508 STTRRPRKSTHRPKKPTRRPRKNSPRTRKPTRRPR 542
>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 516 STFRRREKNTHRAKRRANPTS*RTCRNPKPFQRPR 412
ST RR K+THR K+ + R KP +RPR
Sbjct: 145 STTRRPRKSTHRPKKPTRRPRKNSPRTRKPTRRPR 179
>SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -2
Query: 602 LAIAVPQLDTHLLHGRVSVIVRTFYFHRNPRSVGERKIRIGRSGVQTQ 459
L++ +D H + S + T H VGE+ + IG+ G Q
Sbjct: 670 LSVLPNDVDNHTMAFDTSTVYNTHIHHAETVIVGEKNVAIGKEGASVQ 717
>SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)
Length = 772
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 465 LHAASPDAYFSLADGTWIPV-EIKCPYNYRDTTVEQ 569
+ ASPD + D I + EIKCPY +R+TT+ +
Sbjct: 586 IERASPDGLV-MCDCCGIGLCEIKCPYKHRNTTIAE 620
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 165 EYLCLNANETTALDSTRSFSHNC*IYIFLITTFAL-RSTTQ 46
EYLCLNA E T SF+H + + + +F+ R T Q
Sbjct: 8 EYLCLNATERPVSIQTLSFAH---VKVLAVNSFSFWRGTNQ 45
>SB_51003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 278 IVQFVRQHVTTTSAFVWKRTRKSRQRNQRHHV 373
+ V HVT A++W R R+S +R RH+V
Sbjct: 12 VAMIVVDHVTEARAWLWDRRRRSSRR--RHYV 41
>SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 931
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF NYVK+ + + RSN I P D+A++L
Sbjct: 323 KFWNYVKSRRSEVSDIPSLRSNDGISISPRDKAQVL 358
>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
Length = 515
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +3
Query: 330 NAQESHVKETNGIMLDHMREIIKNKITSAVVETVLDCGMFFSSLGLHAASPDAYFSLADG 509
N +SH I + H+ +IKN+ T+ V D + L P+A + D
Sbjct: 16 NLVDSHSNALYSIGITHLHHVIKNQNTNLHVTPTHDNSLLDKEPSLDDNGPEAAGRMTD- 74
Query: 510 TWIPVE 527
W P E
Sbjct: 75 -WSPYE 79
>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2124
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF NYVK+ + + RSN I P D+A++L
Sbjct: 1713 KFWNYVKSRRSEVSDIPSLRSNDGISISPRDKAQVL 1748
>SB_28641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 507 RRREKNTHRAKRRANPTS*RTCRNPK 430
RR + R +RRA P R CR P+
Sbjct: 11 RRHSRRRRRPRRRARPRRRRPCRRPR 36
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 329 KRTRKSRQRNQRHHVRPHARNYKK*NYER 415
K R+ RQ +QR H R H R +++ + R
Sbjct: 172 KHQRRQRQEHQRRHRRQHQRRHRQKHQRR 200
>SB_2139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF NYVK+ + + RSN + P D+A++L
Sbjct: 109 KFWNYVKSRRSEVSDIPSLRSNDGVSISPRDKAQVL 144
>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 267 CCDPN-AIASTAHFCFVPWWPFRHVKSLHDPKVLD 166
C PN IAS H F W F ++K+ H+ + L+
Sbjct: 598 CSVPNETIASVLHQTFSASWSFSNIKTTHELRFLN 632
>SB_34486| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF NYVK+ + + RSN + P D+A++L
Sbjct: 51 KFWNYVKSRRSEVSDIPSLRSNDGVSISPRDKAQVL 86
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF NYVK+ + + RSN + P D+A++L
Sbjct: 33 KFWNYVKSRRSEVSDIPSLRSNDGVSISPRDKAQVL 68
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF NYVK+ + + RSN + P D+A++L
Sbjct: 62 KFWNYVKSRRSEVSDIPSLRSNDGVSISPRDKAQVL 97
>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
Length = 347
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF YV+ + RS+ IH P D+AE+L
Sbjct: 74 KFWGYVRNCRSEGQGIPALRSDDSIHVSPKDKAEVL 109
>SB_29592| Best HMM Match : DUF1528 (HMM E-Value=6.8)
Length = 129
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 497 RKIRIGRSGVQTQRAKEHAAIQNRFNDRARNFIFYNFAH 381
+KIR RSG K H Q F + + F Y AH
Sbjct: 29 KKIRRNRSGAALLMTKRHLIAQGDFIEGLKTFAEYRKAH 67
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF YV+ + RS+ IH P D+AE+L
Sbjct: 316 KFWGYVRNCRSEGQGIPALRSDDSIHVSPKDKAEVL 351
>SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = +1
Query: 187 QRFYVSKRPPGDKAKMSCG--RYC---VWIAAQRLHRPIRPATCYN-DQRFCLE 330
+R+Y P DK KMS RY VW+ A L+ P+ Y + FC E
Sbjct: 186 ERYYAVMYPYNDKGKMSIKKLRYIFIGVWLGAAVLNLPLFLTIYYEASKHFCFE 239
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF YV+ + RS+ IH P D+AE+L
Sbjct: 568 KFWGYVRNCRSEGQGIPALRSDDSIHVSPKDKAEVL 603
>SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF YV+ + RS+ IH P D+AE+L
Sbjct: 516 KFWGYVRNCRSEGQGIPALRSDDSIHVSPKDKAEVL 551
>SB_23201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 331 FPNKSAGRCNMLPDELDDADAVLRSKRNS 245
F +KSAGR N PD+ D++ + K N+
Sbjct: 69 FGSKSAGRANSNPDDFSDSNLDRKWKMNN 97
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 90 KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 197
KF YV+ + RS+ IH P D+AE+L
Sbjct: 652 KFWGYVRNCRSEGQGIPALRSDDSIHVSPKDKAEVL 687
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,891,216
Number of Sequences: 59808
Number of extensions: 422875
Number of successful extensions: 1185
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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