Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n12
         (603 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase ...    29   4.9  
AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p pro...    29   4.9  
AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA...    29   4.9  
BT010055-1|AAQ22524.1|  954|Drosophila melanogaster LD16082p pro...    28   8.5  
AF140746-1|AAF22575.1|  954|Drosophila melanogaster Ral guanine ...    28   8.5  
AE014298-2363|AAF48588.1| 1061|Drosophila melanogaster CG13957-P...    28   8.5  
AE014296-2321|AAF49790.2|  954|Drosophila melanogaster CG8865-PA...    28   8.5  

>AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 393 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 569
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 570 MRVXLGNGNRK 602
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 393 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 569
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 570 MRVXLGNGNRK 602
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 393 IKNKITS-AVVETVLDCGMFFSSLGLHAASPDAYFSLADGTWIPVEIKCPYNYRDTTVEQ 569
           +K K++S  +  + +D  MFF S G +      YF L   + +   I  P NY     E+
Sbjct: 403 LKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSINHPNNY----FEE 458

Query: 570 MRVXLGNGNRK 602
            ++ +GN  ++
Sbjct: 459 SQIAMGNRQKR 469


>BT010055-1|AAQ22524.1|  954|Drosophila melanogaster LD16082p
           protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 292 DELDDADAVLRSKRNSVHSSFLLCPLVAFSTRKISARSK 176
           D+LD + AVL ++R  V S   LC     + R +S ++K
Sbjct: 140 DDLDVSSAVLNAERKVVASLKYLCACTGATLRNLSKKTK 178


>AF140746-1|AAF22575.1|  954|Drosophila melanogaster Ral guanine
           nucleotide exchangefactor 2 protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 292 DELDDADAVLRSKRNSVHSSFLLCPLVAFSTRKISARSK 176
           D+LD + AVL ++R  V S   LC     + R +S ++K
Sbjct: 140 DDLDVSSAVLNAERKVVASLKYLCACTGATLRNLSKKTK 178


>AE014298-2363|AAF48588.1| 1061|Drosophila melanogaster CG13957-PA
           protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 278 IVQFVRQHVTTTSAFVWKRTRKSR-QRNQRHHV-RPHARNYKK*NYER 415
           I QF+RQ   T S F+     KSR  +  R H    H+++Y+   YER
Sbjct: 767 IYQFLRQKFYTFSTFLHDEQIKSRLLKELRFHTEHKHSKSYQSYPYER 814


>AE014296-2321|AAF49790.2|  954|Drosophila melanogaster CG8865-PA,
           isoform A protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 292 DELDDADAVLRSKRNSVHSSFLLCPLVAFSTRKISARSK 176
           D+LD + AVL ++R  V S   LC     + R +S ++K
Sbjct: 140 DDLDVSSAVLNAERKVVASLKYLCACTGATLRNLSKKTK 178


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,308,914
Number of Sequences: 53049
Number of extensions: 601378
Number of successful extensions: 1598
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)