Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n12
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF078790-7|AAC26936.1|  272|Caenorhabditis elegans Hypothetical ...    29   3.4  
U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1b protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 252 AIASTAHFCFVPWWP 208
           A+AS A FCF+P WP
Sbjct: 47  ALASEADFCFIPEWP 61


>AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1a protein.
          Length = 814

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 252 AIASTAHFCFVPWWP 208
           A+AS A FCF+P WP
Sbjct: 250 ALASEADFCFIPEWP 264


>AF078790-7|AAC26936.1|  272|Caenorhabditis elegans Hypothetical
           protein F36H12.14 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 518 NPRSVGERKIRIGRSGVQTQRAKEHAAIQNRFNDRARNFIFYNFA 384
           N + + +   R+G   ++ Q    HA +   FN+ A+N+ FYNFA
Sbjct: 184 NAKQLNQEATRVGIKPIEIQ----HAVLP--FNNPAKNYHFYNFA 222


>U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical
           protein C06E4.8 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 315 ALLFGNAQESHVKETNGIMLDHMREIIKNKI 407
           A  FG  +   + E NG M  H+ EIIKN++
Sbjct: 122 AEFFGMNETLKIIEENGDMYGHLTEIIKNRM 152


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 519 ESTFRRREKNTHRAKRRANPTS*RT--CRNPKPFQRP 415
           ES  R R ++THR +RR+   S R+   RN +P +RP
Sbjct: 263 ESRRRSRSRDTHRTRRRSPERSRRSTETRNERP-ERP 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,463
Number of Sequences: 27780
Number of extensions: 309749
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)