Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n10
         (332 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B62C1 Cluster: PREDICTED: similar to conserved ...    60   1e-08
UniRef50_UPI0000DB7517 Cluster: PREDICTED: similar to ribosomal ...    50   8e-06
UniRef50_A0CN08 Cluster: Chromosome undetermined scaffold_22, wh...    32   2.9  
UniRef50_A0YGT6 Cluster: 4-coumarate--CoA ligase, putative; n=7;...    31   3.9  
UniRef50_Q8D3F9 Cluster: FlgF protein; n=1; Wigglesworthia gloss...    31   5.1  
UniRef50_Q3WG55 Cluster: AMP-dependent synthetase and ligase; n=...    31   6.7  
UniRef50_Q83VG6 Cluster: Rhusiopathiae surface protein A; n=1; E...    30   8.9  
UniRef50_Q621X0 Cluster: Putative uncharacterized protein CBG023...    30   8.9  
UniRef50_Q0W7W8 Cluster: Putative prenyltransferase; n=1; uncult...    30   8.9  

>UniRef50_UPI00015B62C1 Cluster: PREDICTED: similar to conserved
           hypothetical protein; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to conserved hypothetical protein -
           Nasonia vitripennis
          Length = 584

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
 Frame = +1

Query: 4   PMSIAVPLYLTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPGS-KVTVAPDGTVHVIK 177
           P+S+A+P+Y++L+S N V  P +   +PK ++ +E ELST   + KV VAPDG+V V K
Sbjct: 493 PLSLAIPIYVSLKSRNEVEVPVLTPKRPKAYHEVEGELSTYTSNVKVHVAPDGSVRVEK 551


>UniRef50_UPI0000DB7517 Cluster: PREDICTED: similar to ribosomal L1
           domain containing 1; n=1; Apis mellifera|Rep: PREDICTED:
           similar to ribosomal L1 domain containing 1 - Apis
           mellifera
          Length = 327

 Score = 50.4 bits (115), Expect = 8e-06
 Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +1

Query: 7   MSIAVPLYLTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPG-SKVTVAPDGTVHVIK 177
           +S+ +P+Y+TL++   V+ P ++  +PK ++ +  EL+T PG + VTV P+G + V K
Sbjct: 255 ISLGLPIYMTLKNKCLVDVPVMQPRRPKAYHNVSGELTTAPGIATVTVTPEGDITVKK 312


>UniRef50_A0CN08 Cluster: Chromosome undetermined scaffold_22, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_22,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 385

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 19  VPLYLTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPGSK 138
           V   LTL S   +    +K NK K F+ IED +S +P  K
Sbjct: 234 VEFILTLGSLQNLEYLNLKNNKIKEFDDIEDSISNLPNIK 273


>UniRef50_A0YGT6 Cluster: 4-coumarate--CoA ligase, putative; n=7;
           Proteobacteria|Rep: 4-coumarate--CoA ligase, putative -
           marine gamma proteobacterium HTCC2143
          Length = 538

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 67  KIKKNKPKTFNTIEDELSTIPGSKVTVAPDGTVHVI 174
           K ++   KTF TI  E  +IPG   TV  DGT+ ++
Sbjct: 395 KDEEKSAKTFKTINGERYSIPGDWCTVEADGTLTLL 430


>UniRef50_Q8D3F9 Cluster: FlgF protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           FlgF protein - Wigglesworthia glossinidia brevipalpis
          Length = 246

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 88  KTFNTIEDE---LSTIPGSKVTVAPDGTVHVIKPNTQKRKINTV 210
           K F  I  E   L   PGS +T++ DGT+  I P    + I +V
Sbjct: 116 KNFPVIGSENGALEVTPGSDLTISSDGTISAIGPGESSKSITSV 159


>UniRef50_Q3WG55 Cluster: AMP-dependent synthetase and ligase; n=1;
           Frankia sp. EAN1pec|Rep: AMP-dependent synthetase and
           ligase - Frankia sp. EAN1pec
          Length = 635

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +1

Query: 52  TVNAPKIKKNKPKTFNTIEDELSTIPGSKVTVAPDGTVHVIKPN 183
           T  A  +  N+P T N I      IPG+ V ++PDG V V  PN
Sbjct: 399 TEAATAVTVNQPGT-NRIGTVGQPIPGTTVAISPDGEVLVAGPN 441


>UniRef50_Q83VG6 Cluster: Rhusiopathiae surface protein A; n=1;
            Erysipelothrix rhusiopathiae|Rep: Rhusiopathiae surface
            protein A - Erysipelothrix rhusiopathiae
          Length = 1991

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +1

Query: 34   TLRSSNTVNA---PKIKKNKPKTFNTIEDELSTIPGSKVTVAPDG-TV--HVIKPNTQKR 195
            TLR   T       +++ ++ KT+     EL+++P +    +PDG TV  H + P T  R
Sbjct: 1316 TLRDGETTTVFEDLEVRDDQGKTYTYFVKELTSVPNTVTQYSPDGLTVYNHYVSPTTSIR 1375

Query: 196  KINT 207
             + T
Sbjct: 1376 ILKT 1379


>UniRef50_Q621X0 Cluster: Putative uncharacterized protein CBG02313;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG02313 - Caenorhabditis
           briggsae
          Length = 298

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +1

Query: 1   IPMSIAVPLYLTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPGSKVTVAPDGTVHVIKP 180
           I ++IA+ +  T +S NT   PK KK++ K+ +  + ++      K T +  G  H    
Sbjct: 56  ITITIALLVKCTSKS-NTKRTPKNKKHEQKSKDITQSQMKKNISKKKTSSKKGKQHAKGK 114

Query: 181 NTQKRKINTV 210
           + QK K +T+
Sbjct: 115 SKQKAKKSTL 124


>UniRef50_Q0W7W8 Cluster: Putative prenyltransferase; n=1;
           uncultured methanogenic archaeon RC-I|Rep: Putative
           prenyltransferase - Uncultured methanogenic archaeon
           RC-I
          Length = 328

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 152 GATVTLLPGIVDNS--SSIVLKVFGLFFLILGALTVFDDLK 36
           GAT+ LL G+  NS  S++ L      FL L  LTVF D+K
Sbjct: 179 GATIALLYGLSYNSYTSALTLTFTAFVFLKLFILTVFYDIK 219


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.308    0.126    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,990,311
Number of Sequences: 1657284
Number of extensions: 3881444
Number of successful extensions: 8851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8848
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 10394654088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)