Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n10
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 28 0.43
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 1.7
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 25 4.0
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 24 5.3
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 24 5.3
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 24 7.0
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 24 7.0
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 23 9.2
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 23 9.2
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 23 9.2
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.9 bits (59), Expect = 0.43
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 46 SNTVNAPKIKKNKPKTFNTIEDELST--IPGSKVTV 147
S T NAP K +KP T E L + +PG+ +TV
Sbjct: 349 SETENAPVSKPSKPNTLTEDEKPLQSTKLPGNSLTV 384
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 110 SSIVLKVFGLFFLILGALTVFD 45
SS +L+++G FFL++ A +FD
Sbjct: 299 SSYLLQIWGGFFLVIFAFVLFD 320
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 162 CPVWCNSHFATWNC*QFILYCVES 91
C V S A W+C +F L C E+
Sbjct: 192 CVVLKPSELAPWSCLEFALICKEA 215
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 24.2 bits (50), Expect = 5.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -1
Query: 143 VTLLPGIVDNSSSIVLKVFGLFFLILGALTVFDDLKVRYSGTAIDIG 3
+ + PGIV ++ +F I+ +DLK+ G I +G
Sbjct: 274 IEIRPGIVTKDDDGRIRCQPIFSRIISLFAEHNDLKIAVPGGLIGVG 320
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 24.2 bits (50), Expect = 5.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3
Query: 162 CPVWCNSHFATWNC*Q 115
C +WC+S F ++C Q
Sbjct: 32 CRIWCSSPFMAFSCTQ 47
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 55 VNAPKIKKNK-PKTFNTIEDELSTIPGSKVTVAPDGTV 165
V++P I + TFN ++ ++P V +APD ++
Sbjct: 788 VDSPNILREVLSMTFNKGDNNFESVPPYAVVLAPDSSI 825
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -3
Query: 207 SIYFPLLSVGFYNMYCPVWCNSH 139
S YF V Y CP+W N +
Sbjct: 53 SDYFSYYRVNLYRSSCPLWENDN 75
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 23.4 bits (48), Expect = 9.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 247 IHFQIQFLHLP*LQYLFSSFECWVL*HVLSRLVQQSL 137
+HF +L P L +FSS WV H L +V ++L
Sbjct: 309 VHF---YLETPFLAGIFSSIFFWVWCHSLLYIVPKTL 342
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -3
Query: 192 LLSVGFYNMYCPVWCNSHFATWNC*QFILYCVESFWFILF 73
LL V YN+Y N+H + C + + + W L+
Sbjct: 226 LLLVATYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLFLY 265
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 23.4 bits (48), Expect = 9.2
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +1
Query: 7 MSIAVPLYLTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPGSKVTVAPDGTVHVI 174
MS P + P ++ +PKT + + + ST+ K T+ + H++
Sbjct: 1 MSFFAPRNKKTEQEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHML 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.126 0.342
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,032,196
Number of Sequences: 5004
Number of extensions: 18081
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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