Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n10
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174...    28   1.6  
07_01_0847 + 6884862-6884902,6884943-6885546                           28   2.1  
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974...    27   3.7  
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37...    27   4.9  

>06_01_1173 +
           10014391-10014678,10015478-10017245,10017333-10017436,
           10017632-10017706,10017887-10017918,10019396-10019482,
           10020848-10021294,10021477-10021630,10022203-10022329,
           10022547-10022632,10022719-10022790,10023083-10023286,
           10023732-10024049
          Length = 1253

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 31  LTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPGSKV 141
           L  RSS   N P I    P  ++ ++D+ +TIP  +V
Sbjct: 213 LVQRSSVQSNRPSISDPVPSIYDIVDDDYTTIPIGRV 249


>07_01_0847 + 6884862-6884902,6884943-6885546
          Length = 214

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +1

Query: 31  LTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPGSK 138
           L LRS+NT+    +KK KPK   T E+++ T PG K
Sbjct: 80  LLLRSANTLERNTLKK-KPKEAVTTEEKV-TEPGEK 113


>09_04_0038 -
           13996505-13996836,13997047-13997077,13997307-13997420,
           13997546-13997686,13997787-13997851,13997943-13998039,
           13998096-13998257,13998360-13998473,14001263-14001311,
           14001967-14002047,14003504-14003561,14003671-14004031,
           14004129-14004213,14004320-14004591,14004712-14004914,
           14005419-14005494
          Length = 746

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 204 IYFP-LLSVGFYN-MYCPVWCNSHFA 133
           +Y P L+ +  YN M C + CN HF+
Sbjct: 465 VYLPVLIEISHYNKMNCVILCNKHFS 490


>06_01_0037 -
           369498-369568,369668-369760,369889-369991,370061-370156,
           370227-370293,370379-370446,370606-370681,370890-370975,
           371065-371150,371337-371409,371490-371735,371845-371937,
           372045-372119,372496-372540,372631-372708,372805-372921,
           373865-373894
          Length = 500

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +1

Query: 22  PLYLTLRSSNTVNAPKIKKNKPK---TFNTIEDELSTIP--GSKVTVAPDGTVHVIKPNT 186
           P+   L   N V    IK   P        IED L+++     K T A  G  +V  PNT
Sbjct: 218 PIARKLAEDNNVPLSSIKGTGPDGRILKADIEDYLASVAKGAKKETAAAPGLGYVDLPNT 277

Query: 187 QKRKI 201
           Q RK+
Sbjct: 278 QIRKV 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.308    0.126    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,919,221
Number of Sequences: 37544
Number of extensions: 93691
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)