Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n10
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10750| Best HMM Match : CARD (HMM E-Value=0.015)                    28   2.2  
SB_12675| Best HMM Match : Cornichon (HMM E-Value=2.3)                 28   2.2  
SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)                   27   3.8  
SB_5141| Best HMM Match : Synaptobrevin (HMM E-Value=0.0092)           27   5.0  
SB_13112| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_44729| Best HMM Match : SET (HMM E-Value=0)                         26   6.6  
SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16)                  26   8.8  

>SB_10750| Best HMM Match : CARD (HMM E-Value=0.015)
          Length = 275

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 85  PKTFNTIEDELSTIPGSKVTVAPDGTVHV-IKPNTQKRKI 201
           PK FNT++D   TI G  VT+  +    + I+P   + +I
Sbjct: 69  PKQFNTLDDNDETIQGYTVTIEFESFCKIWIQPTESRLRI 108


>SB_12675| Best HMM Match : Cornichon (HMM E-Value=2.3)
          Length = 225

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 180 GFYNMYCPVWCNSHFATWNC*QFILYCVESFWFILF 73
           G+   Y   +   H   +    F+LYC++   F+LF
Sbjct: 127 GYMTCYVTRYVTRHITRYMTLMFLLYCIQHMQFLLF 162


>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 91  TFNTIEDELSTIPGSKVTVAPDGTVHV 171
           T + +E+E+  + G+KVTV+PDG + V
Sbjct: 637 TADDLENEV-VVAGTKVTVSPDGPIKV 662


>SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)
          Length = 319

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 46  SNTVNAP-KIKKNKPKTFNTIEDELSTIPGSKVTVA 150
           +N   AP +++KN P+T+   E+ ++ + G KV  A
Sbjct: 71  ANVKKAPERVRKNFPETWLWTEENVNNVTGEKVITA 106


>SB_5141| Best HMM Match : Synaptobrevin (HMM E-Value=0.0092)
          Length = 604

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = +1

Query: 13  IAVPLYLTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPGSKVTVAPDGTVHV 171
           I VPL+L  R   TV       +KP    T+E    T  G     +PD    V
Sbjct: 223 IVVPLWLVFRPDWTVRGELFNIHKPYREKTVEKCRKTTGGQVDPSSPDARKEV 275


>SB_13112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 180 GFYNMYCPVWCNSHFATWNC*QFILYCVESFWFILF 73
           G+   Y   +   H   +    F+LYC++   F+LF
Sbjct: 175 GYMTCYVTRYVTRHITRYMTLMFLLYCIQHRQFLLF 210


>SB_44729| Best HMM Match : SET (HMM E-Value=0)
          Length = 1112

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 67  KIKKNKPKTFNTIEDELSTIPGSKVTVAPDGTVHVIKPNTQKRKI 201
           K+K  K +   +IED    +   +VTV  D    V+K + ++++I
Sbjct: 96  KLKGQKKRKQKSIEDTNDVVKTDQVTVKEDLETAVVKISPKRKRI 140


>SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16)
          Length = 517

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   PMSIAVPLYLTLRSSNTVNAPKIKKNKP 87
           P+S  +P+  T R+SN   AP    N+P
Sbjct: 399 PVSEVIPVPTTSRTSNAETAPSEDANRP 426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.308    0.126    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,338,403
Number of Sequences: 59808
Number of extensions: 130918
Number of successful extensions: 364
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)