Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n10
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z67879-3|CAA91789.2|  278|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    26   7.5  
U61955-9|AAC24409.3|  371|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    25   10.0 

>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = +1

Query: 19  VPLYLTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPGSKVTVAP 153
           VP       +N   A        K  NTI   LSTI GS VT  P
Sbjct: 493 VPTTTNTPPANPTTATPTTVGTSKQTNTISPHLSTITGSIVTSTP 537


>Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical
           protein T23D5.7 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 210 YSIYFPLLSVGFYNMYCPVWCNSHFATWNC*QFILYCVESFWF 82
           YSI   LL+V F   Y  V+ +     +    F+L  V S+WF
Sbjct: 100 YSITISLLAVQFVYRYIAVFHSEGLRFFKGWYFLLTIVYSYWF 142


>Z67879-3|CAA91789.2|  278|Caenorhabditis elegans Hypothetical
           protein C05E7.4 protein.
          Length = 278

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -3

Query: 207 SIYFPLLSVG--FYNMYCPVWCNSHFATWNC*QFILYCVESFWFILFDFGSINCV 49
           S+Y  +L+    FY++YC   C    +TW      L  +    + +  FG +  +
Sbjct: 115 SVYITVLAAFDCFYSVYCGTKCEPKRSTWAPRVLALVVISVAGYNIVQFGDLQAI 169


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 61  APKIKKNKPKTFNTIEDELSTIPGSKVTVAPDGTVHV-IKPNTQKRKINT 207
           AP+++  + +T   +  +L   PG   T+ P     V  +P  QK+  NT
Sbjct: 295 APELRNLRRETVKLVPAQLLRRPGDNKTIVPRQAAPVQRRPEVQKQAKNT 344


>U61955-9|AAC24409.3|  371|Caenorhabditis elegans Hypothetical
           protein M03D4.6 protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 4   PMSIAVPLYLTLRSSNTVNAPKIKKNKPKTFNTIED 111
           P+S+  PLYLT   +        +KN P  F  I D
Sbjct: 314 PVSLPAPLYLTAEMAERGTKNLAEKNGPIIFQGIVD 349


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/55 (25%), Positives = 18/55 (32%)
 Frame = +1

Query: 22  PLYLTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPGSKVTVAPDGTVHVIKPNT 186
           P   T   + T  AP      P T  T     +T+P +  T     T     P T
Sbjct: 182 PTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTT 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.308    0.126    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,725,850
Number of Sequences: 27780
Number of extensions: 103297
Number of successful extensions: 240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)