Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n08
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 148 6e-37
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 148 6e-37
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 7.2
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 9.5
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 25 9.5
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 25 9.5
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.5
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 148 bits (359), Expect = 6e-37
Identities = 73/142 (51%), Positives = 88/142 (61%)
Frame = +1
Query: 55 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 234
MGAY+Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 235 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 414
TYGKP GVN LK R+ + AEE +SYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 415 VAQDSSYKYFEVILVDPSHKVI 480
V QD++YK+FEVILVDPSHK I
Sbjct: 121 VNQDATYKFFEVILVDPSHKAI 142
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 148 bits (359), Expect = 6e-37
Identities = 73/142 (51%), Positives = 88/142 (61%)
Frame = +1
Query: 55 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 234
MGAY+Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 235 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 414
TYGKP GVN LK R+ + AEE +SYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 415 VAQDSSYKYFEVILVDPSHKVI 480
V QD++YK+FEVILVDPSHK I
Sbjct: 121 VNQDATYKFFEVILVDPSHKAI 142
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 406 SYWVAQDSSYKY---FEVILVDPSHKVIPVEIGFSQLFEKFYHWLMSISPKGSLQLGSTS 576
+Y+ Q + YK F++ L+ S I + S L +FY WLM +S L + +S
Sbjct: 253 NYFPIQSTFYKDVKPFDLKLLHMSVASIVLRNDLS-LNRRFYAWLMGLSKDTELSISDSS 311
Query: 577 VIAE 588
+ +
Sbjct: 312 ITVD 315
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 413 GLHKILHTSISRLSSWTRHTRSFQLRSASANYLKSFI 523
GL+++ + L +WT +RS ++ + N+ K F+
Sbjct: 304 GLYRLHEFTKVELFAWTHPSRSSEMFNEIVNFQKEFV 340
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 502 QLFEKFYHWLMSISPKGSLQLG 567
+L + FY L+S SPKG L +G
Sbjct: 187 ELRDDFYTSLLSWSPKGDLAIG 208
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 421 QDSSYKYFEVILVDPSHKVIPVEIGFSQLFEKFYHWLMSI 540
QD + Y E +D S V G ++ +++ +WL S+
Sbjct: 225 QDLFHSYLEERKIDESLSSFIVSFGLTKELKEYINWLESV 264
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 121 LRVRVWQYRQLTRMHRAPRPTRPD 192
L+ +W Y L R++ PR PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 378 SLRWSPCVELLLGCTRFF 431
SL+ P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 354 GLKVARGLQLVDTMALGLAISGTLSNW 274
GL VA G Q DT+ LG+ I +S++
Sbjct: 93 GLTVALGPQFPDTLVLGMEIRMQVSDY 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,374
Number of Sequences: 5004
Number of extensions: 60429
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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