Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n08
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 146 1e-35
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 144 4e-35
05_02_0037 + 5883285-5884292 31 0.61
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 30 1.4
10_01_0333 + 3675806-3676001,3676783-3677783 29 3.2
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302... 28 5.6
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 25 6.7
10_02_0077 - 4985493-4986388,4986731-4986926 28 7.5
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882... 28 7.5
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 9.9
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 146 bits (355), Expect = 1e-35
Identities = 71/142 (50%), Positives = 87/142 (61%)
Frame = +1
Query: 55 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 234
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 235 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 414
YGKPK G+ QLK RN +S+AEE +SYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 415 VAQDSSYKYFEVILVDPSHKVI 480
V +DS+YKYFE+ILVD +H I
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAI 142
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 144 bits (350), Expect = 4e-35
Identities = 70/141 (49%), Positives = 86/141 (60%)
Frame = +1
Query: 58 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 237
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 238 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 417
YGKPK G+ QLK RN +S+AEE +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 418 AQDSSYKYFEVILVDPSHKVI 480
+DS+YKYFE+ILVD +H I
Sbjct: 227 NEDSTYKYFEIILVDVAHSAI 247
>05_02_0037 + 5883285-5884292
Length = 335
Score = 31.5 bits (68), Expect = 0.61
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 138 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 290
AV ++ AP ++ +A +SP C R CC +P + WWP+ GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 354 GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 238
G +V G++ V +ALGL ++GT W L T +D++
Sbjct: 591 GSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629
>10_01_0333 + 3675806-3676001,3676783-3677783
Length = 398
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 534 HQPVIKLFK*LAEADLNWNDLV*RVHEDNLEIL 436
HQ ++ F+ + D NWNDL VH IL
Sbjct: 283 HQCLLNAFRSVGNTDPNWNDLFWAVHPGGRAIL 315
>12_01_0386 +
3023431-3023522,3023951-3024097,3024227-3024308,
3024801-3024842,3024930-3024989,3025430-3027109,
3027239-3027340,3027461-3027604,3027704-3027829,
3027933-3028100
Length = 880
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 529 LMSISPKGSLQLGSTSVIAE 588
++ + P+G LQLGSTSVI E
Sbjct: 125 IIPVLPRGVLQLGSTSVILE 144
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 25.0 bits (52), Expect(2) = 6.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 295 YGKPKSHGVNQLKPTRN 345
Y KPK G+ QLK RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292
Score = 21.4 bits (43), Expect(2) = 6.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 442 FEVILVDPSHKVI 480
FE+ILVD +H I
Sbjct: 299 FEIILVDVAHSAI 311
>10_02_0077 - 4985493-4986388,4986731-4986926
Length = 363
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 534 HQPVIKLFK*LAEADLNWNDLV*RVHEDNLEIL 436
HQ ++ F+ + D NWNDL VH IL
Sbjct: 250 HQCLLDAFQSVGNKDPNWNDLFWAVHPGGRAIL 282
>09_04_0660 -
19286653-19287271,19287791-19287916,19288016-19288221,
19288417-19288549,19288632-19288713,19288906-19289035,
19289187-19289279,19289391-19289510,19289594-19289660,
19290079-19290137,19290719-19290943
Length = 619
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 437 SISRLSSWTRHTRSFQLRSASANYLKS--FITG*CPYPQKVVYSLALPLSLRKSMGGDGS 610
S+ RL W RH NY ++ G C P++ YS A+ ++ +GG GS
Sbjct: 488 SLQRL--WQRHRVDLAFYGHVHNYERTCPVYDGRCASPERSRYSGAVGGTIHAVVGGGGS 545
Query: 611 H 613
H
Sbjct: 546 H 546
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 261 WPQASSC*G-CHLWQAQEPWCQPVEAH 338
WPQ CHL Q +EPW ++AH
Sbjct: 46 WPQDQRWYQHCHLQQEEEPWRCQIKAH 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,119,616
Number of Sequences: 37544
Number of extensions: 442898
Number of successful extensions: 1061
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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