Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n08
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             171   3e-43
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   3.3  
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   28   5.8  
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 28   7.6  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  171 bits (417), Expect = 3e-43
 Identities = 82/142 (57%), Positives = 97/142 (68%)
 Frame = +1

Query: 55  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 234
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60

Query: 235 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 414
                             ATYGKP + GVN+LK  R+L+S+AEE            +SYW
Sbjct: 61  IYRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYW 120

Query: 415 VAQDSSYKYFEVILVDPSHKVI 480
           V QDS YKYFEVI+VDP HK I
Sbjct: 121 VGQDSIYKYFEVIMVDPFHKAI 142


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 112 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 225
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 436  CMKNLVQPSKSSTHGDHRNDGQHAPQ-QWIEGCAWASTG*HHGSW 305
            C +    P ++S+H  +RN GQ A + Q     A A+ G  +G W
Sbjct: 883  CCRRWKSPGETSSHTVYRNKGQDAGEIQRTYTIAGANPGFQNGGW 927


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 433 MKNLVQPSKSSTHGDHRNDGQHAPQQWIEGCAW 335
           ++NL  P +  T G     G + P+ W+ GCAW
Sbjct: 423 LQNLYIPPEGVT-GIPLGVGNYGPEAWLLGCAW 454


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 102 RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCA 254
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS 757


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,828,420
Number of Sequences: 59808
Number of extensions: 502400
Number of successful extensions: 1023
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)