Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n06
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024830-3|AAF59604.3|  180|Caenorhabditis elegans Hypothetical ...    39   0.003
M14334-2|AAA28071.1|  145|Caenorhabditis elegans protein ( C.ele...    33   0.22 
AC006774-1|AAF60615.1|  145|Caenorhabditis elegans Heat shock pr...    33   0.22 
L15188-10|AAA27953.1|  110|Caenorhabditis elegans Heat shock pro...    30   1.2  
U29612-8|AAW57827.1|  108|Caenorhabditis elegans Heat shock prot...    29   2.7  
U29612-7|AAO61437.1|  205|Caenorhabditis elegans Heat shock prot...    29   2.7  
U29612-6|AAA68804.1|  219|Caenorhabditis elegans Heat shock prot...    29   2.7  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z36237-1|CAA85271.2|  619|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U13076-1|AAA96984.1|  463|Caenorhabditis elegans steroid hormone...    28   6.3  
AY204167-1|AAO39171.1|  619|Caenorhabditis elegans nuclear recep...    28   6.3  
AF273770-1|AAG15119.1|  469|Caenorhabditis elegans nuclear recep...    28   6.3  
AF083224-1|AAD03682.1|  619|Caenorhabditis elegans nuclear recep...    28   6.3  

>AC024830-3|AAF59604.3|  180|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.6 protein.
          Length = 180

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTK 526
           I V+GS   KED +    S F   + LP   +   V ++LT+DG+L + A   E   K +
Sbjct: 104 IIVEGSHGEKEDTYGTIESTFKRRFPLPKAVAPESVQSQLTADGHLTIDAKAPE--PKQE 161

Query: 527 NTERV-VPIVETGAPYKK 577
               + + ++ T A  +K
Sbjct: 162 GARPIQIKVINTSAEQQK 179


>M14334-2|AAA28071.1|  145|Caenorhabditis elegans protein (
           C.elegans heat shockprotein genes 16-41 and 16-2,
           complete cds, flanked byCeRep16 repetitive elements. ).
          Length = 145

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +2

Query: 353 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENV 514
           +QG QE K D H      F     LP +     V + L+ DG L + AP  E V
Sbjct: 75  IQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAV 127


>AC006774-1|AAF60615.1|  145|Caenorhabditis elegans Heat shock
           protein protein 16.2 protein.
          Length = 145

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +2

Query: 353 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENV 514
           +QG QE K D H      F     LP +     V + L+ DG L + AP  E V
Sbjct: 75  IQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAV 127


>L15188-10|AAA27953.1|  110|Caenorhabditis elegans Heat shock
           protein protein 12.2 protein.
          Length = 110

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 496
           + +    E + D+H   A +    Y LP +   + V + L + G L +TA
Sbjct: 57  LLIHCRHETRSDNHGTVAREINRAYKLPDDVDVSTVKSHLATRGVLTITA 106


>U29612-8|AAW57827.1|  108|Caenorhabditis elegans Heat shock protein
           protein 25,isoform c protein.
          Length = 108

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 508
           + V    E K     VF  ++   + LP  ++   +++ L++DG L V AP+ +
Sbjct: 51  LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 103


>U29612-7|AAO61437.1|  205|Caenorhabditis elegans Heat shock protein
           protein 25,isoform b protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 508
           + V    E K     VF  ++   + LP  ++   +++ L++DG L V AP+ +
Sbjct: 148 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 200


>U29612-6|AAA68804.1|  219|Caenorhabditis elegans Heat shock protein
           protein 25,isoform a protein.
          Length = 219

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 508
           + V    E K     VF  ++   + LP  ++   +++ L++DG L V AP+ +
Sbjct: 162 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 214


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
           protein C06B8.7 protein.
          Length = 3118

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 523 EKYRARCTYCRDWRSVQEGRACR 591
           +++R+ CT   +W S+  G ACR
Sbjct: 146 DRWRSVCTMVTNWTSIDTGTACR 168


>Z36237-1|CAA85271.2|  619|Caenorhabditis elegans Hypothetical
           protein C48D5.1 protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 496 ADQRKC**NEKYRARCTYCRDWRSVQEG 579
           A  + C  +++YR+RC YCR  + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332


>U13076-1|AAA96984.1|  463|Caenorhabditis elegans steroid hormone
           receptor familymember CNR8 protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 496 ADQRKC**NEKYRARCTYCRDWRSVQEG 579
           A  + C  +++YR+RC YCR  + ++ G
Sbjct: 149 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 176


>AY204167-1|AAO39171.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 496 ADQRKC**NEKYRARCTYCRDWRSVQEG 579
           A  + C  +++YR+RC YCR  + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332


>AF273770-1|AAG15119.1|  469|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 496 ADQRKC**NEKYRARCTYCRDWRSVQEG 579
           A  + C  +++YR+RC YCR  + ++ G
Sbjct: 155 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 182


>AF083224-1|AAD03682.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 496 ADQRKC**NEKYRARCTYCRDWRSVQEG 579
           A  + C  +++YR+RC YCR  + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,932,953
Number of Sequences: 27780
Number of extensions: 240564
Number of successful extensions: 857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)