Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n05
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 34 0.11
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 33 0.18
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.56
11_06_0610 - 25449085-25453284 30 1.3
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 1.3
02_01_0302 - 2021221-2023305 29 2.3
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 28 5.2
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757 28 5.2
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 6.9
05_01_0493 + 4113869-4116728,4116859-4117370 28 6.9
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 6.9
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 28 6.9
09_04_0564 + 18565583-18566449,18569662-18570123 27 9.2
09_02_0252 - 6315834-6315959,6316074-6317018 27 9.2
04_04_1125 + 31085106-31085714 27 9.2
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +3
Query: 3 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 173
P SP+ S TS + S ++PT+P TS +P +P +P P PS
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHA 1820
Query: 174 LTPSSLGMAKGVSPPY 221
+PSS SP Y
Sbjct: 1821 YSPSSPNYYSSTSPTY 1836
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 33.1 bits (72), Expect = 0.18
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 3 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 173
P SP+ S TS + S ++PT+P TS S +P +P +P P + +PS
Sbjct: 1699 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHA 1758
Query: 174 LTPSS--LGMAKGVSPPY 221
+PSS L SP Y
Sbjct: 1759 YSPSSPRLSPYSQTSPNY 1776
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 15 AISATSTRSSNPRFHTPTTP 74
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLTPY*KEFAPGLKPPLSSE 158
PP+P A+S P HTP+ P+ T S +P TP K +P PP + E
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP---PPPTPE 667
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLT-SISINPLTPY*KEFAPGLKPPLSSE 158
PP+P A+S P HTP+ P T +P TP + +P PP + E
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSP---PPPAPE 700
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPT---TPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAY 173
PPSP+I + T +TPT TP S +P TP + P + +PS+
Sbjct: 105 PPSPSIGTSPTTPGGGGGYTPTPSDTPPSPSSDTSPSTPG-GGCSSSPTPCDAPPSPSSD 163
Query: 174 LTPSSLGMAKGVSP 215
+P++ G G SP
Sbjct: 164 TSPTTPGGGGGYSP 177
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLTS--ISINPLTPY*KE-----FA--PGLKPPLSSE 158
PSP S+T+ S +P TPT P S ++ P P + FA PG P+ S
Sbjct: 519 PSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPST 578
Query: 159 APSAYLTPSSLGMAKGVSPP 218
PS+ PS + G PP
Sbjct: 579 PPSSGSPPSP---SSGYQPP 595
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/72 (27%), Positives = 26/72 (36%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
PP+P + + RF T +TPD ++ P AP PP P P
Sbjct: 307 PPAPPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPP--PP 364
Query: 183 SSLGMAKGVSPP 218
L A PP
Sbjct: 365 PKLNTAPKPPPP 376
>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
Length = 397
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
PP P+ SATS S+ PTT +S + + P + AP A + TP
Sbjct: 139 PPPPSSSATSAASNTSAGVAPTTTTTSSPAPSYSRPAPHDAAPYQALYGGPYAAATARTP 198
Query: 183 SSLGMAKGVSPPYFQVN 233
++ VSP + Q++
Sbjct: 199 AAAAYHAQVSPFHLQLD 215
>06_01_0018 +
194295-194640,194679-194917,195737-195885,
196248-196342,196685-196780,197248-197399,
198683-198823,199068-199319,199463-199603,
199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,
204844-205359,205455-205650,206299-207182
Length = 1979
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLT 83
PSP +A TRSS+ R H TP T
Sbjct: 9 PSPTSTARETRSSSARGHASPTPTPT 34
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 466 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 609
+PP+D LY + + D +L A++ S E+YR + S V+
Sbjct: 753 SPPWDVTLYQKLEIGVSDVARSLTPANVIGHGWSGEVYRASMPSSGVT 800
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 268 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 357
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP 131
P+P ++A S+R NP PD+T+ ++ + Y + +P
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSP 488
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
PPSP+ S SS+ PT ++ + P T AP PPL P LTP
Sbjct: 22 PPSPSPSPAGAYSSSSFPFFPTAGVTSTTAATPPTTT----APP-SPPLREALPLLSLTP 76
Query: 183 SSLG 194
+S G
Sbjct: 77 ASRG 80
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTP 65
P SP +S +S+R+ +PR H P
Sbjct: 46 PSSPRLSTSSSRTPSPRAHRP 66
>04_04_1125 + 31085106-31085714
Length = 202
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPG--LKPPLSSEAPS 167
P+PA T P TPT P T + P TP P PP + APS
Sbjct: 51 PTPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPPTPAPAPS 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,030,950
Number of Sequences: 37544
Number of extensions: 390270
Number of successful extensions: 1288
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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