Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n05
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 33 0.19
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52) 30 1.3
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 29 2.3
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16) 29 4.1
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_24975| Best HMM Match : ET (HMM E-Value=1) 28 7.1
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 9.4
SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 35.9 bits (79), Expect = 0.027
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGL-KPPLSSEAPSAYLT 179
P +P+ +T + S P TP+TP S P TP PG P + AP +T
Sbjct: 126 PSAPSTPSTPSTPSTPS--TPSTPSTPSTPSTPSTPS-TPITPGTPSTPSTPSAPGTPIT 182
Query: 180 PSSLGMAKGVSPP 218
PS+L S P
Sbjct: 183 PSTLSTPSTPSTP 195
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ +T + S P +TP+TP S P+TP P P + AP +T
Sbjct: 679 PSTPSTPSTPSTPSTPSMPNTPSTPSTPSTPSTPITP----GTP--STPSTPSAPGTPIT 732
Query: 180 PSSLGMAKGVSPP 218
PS+L S P
Sbjct: 733 PSTLSTPSTPSTP 745
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ +T + S P +TP+TP S+ P TP P + PS T
Sbjct: 258 PSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPST 317
Query: 180 PSSLGMAKGVSPP 218
PS+ K S P
Sbjct: 318 PSTPSTPKTPSTP 330
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ +T + S P +TP+TP S+ P TP P + PS T
Sbjct: 808 PSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPST 867
Query: 180 PSSLGMAKGVSPP 218
PS+ K S P
Sbjct: 868 PSTPSTPKTPSTP 880
Score = 32.3 bits (70), Expect = 0.33
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ +T + S P HTP+TP S P TP P P + PS T
Sbjct: 434 PSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTPS-TPSTP--STPSTPSTPSTPST 490
Query: 180 PSSLGMAKGVSPP 218
PS+ S P
Sbjct: 491 PSTSSTPSTPSTP 503
Score = 31.1 bits (67), Expect = 0.76
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ +T + S P TP+TP S P TP P + PS T
Sbjct: 84 PSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPST 143
Query: 180 PSSLGMAKGVSPP 218
PS+ S P
Sbjct: 144 PSTPSTPSTPSTP 156
Score = 31.1 bits (67), Expect = 0.76
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ +T + S P TP+TP S P TP P + PS T
Sbjct: 240 PITPSTPSTPSTPSTPSMPSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPST 299
Query: 180 PSSLGMAKGVSPP 218
PS+ S P
Sbjct: 300 PSTPSTPSAPSTP 312
Score = 31.1 bits (67), Expect = 0.76
Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFH-TPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ T S P H TP TP S P TP P + PS T
Sbjct: 410 PSTPSTPITPRTPSTPCTHSTPGTPSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPST 469
Query: 180 PSSLGMAKGVSPP 218
PS+ S P
Sbjct: 470 PSTPSTPSTPSTP 482
Score = 31.1 bits (67), Expect = 0.76
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ +T + S P TP+TP S P TP P + PS T
Sbjct: 790 PITPSTPSTPSTPSTPSMPSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPST 849
Query: 180 PSSLGMAKGVSPP 218
PS+ S P
Sbjct: 850 PSTPSTPSAPSTP 862
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
P +P+ +T + S PR TP+TP P TP P + PSA TP
Sbjct: 15 PCTPSTPSTPSTPSTPR--TPSTPSTPCTPSTPSTPSTPITPSTPSTPCTHSTPSAPSTP 72
Query: 183 SS 188
S+
Sbjct: 73 ST 74
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
P +P+ +T + S P TP+TP S P TP + P + PSA TP
Sbjct: 455 PSTPSTPSTPSTPSTPS--TPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTP 512
Query: 183 SSLGMAKGVSPP 218
+ S P
Sbjct: 513 GTPSTPSTPSAP 524
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
P +P+ +T + P TP+TP S P TP P + PS TP
Sbjct: 512 PGTPSTPSTPSAPGTPS--TPSTPSTPSTPSTPSTPSTPSMPSTPSTPSTPSTPSTPSTP 569
Query: 183 SSL 191
S+L
Sbjct: 570 STL 572
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/67 (31%), Positives = 26/67 (38%)
Frame = +3
Query: 18 ISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGM 197
+S ST S+ TP+TP S P TP P + PS TPS+ M
Sbjct: 637 LSTPSTPSTPSTRSTPSTPSTPSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTPSM 696
Query: 198 AKGVSPP 218
S P
Sbjct: 697 PNTPSTP 703
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY--*KEFAPGLKPPLSSEAPSAYL 176
P +P+ T + S P TP+TP S I P TP PG P + PS
Sbjct: 389 PSTPSTPRTPSTPSTPC--TPSTPSTPSTPITPRTPSTPCTHSTPG--TPSTPSTPSTPS 444
Query: 177 TPSSLGMAKGVSPP 218
TPS+ + S P
Sbjct: 445 TPSTPSLTHTPSTP 458
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
P +P+ T + S P TP+TP S I P TP P + PS TP
Sbjct: 24 PSTPSTPRTPSTPSTPC--TPSTPSTPSTPITPSTPSTPCTHSTPSAPSTPSTPSTPCTP 81
Query: 183 SSLGMAKGVSPP 218
S+ S P
Sbjct: 82 STPSTPSTPSTP 93
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P +T + S P TP TP S P TP P + PS T
Sbjct: 57 PSTPCTHSTPSAPSTPSTPSTPCTPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPST 116
Query: 180 PSSLGMAKGVSPP 218
PS+ S P
Sbjct: 117 PSTPSTPSTPSAP 129
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAI-SATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ SA T + TP+TP S P TP L P + P+ T
Sbjct: 168 PSTPSTPSAPGTPITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTLSMPSTPSMPNTPST 227
Query: 180 PSSLGMAKGVSPP 218
PS+ +S P
Sbjct: 228 PSTPSTPSTLSTP 240
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +3
Query: 3 PPSPAI-SATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ SA T + TP+TP S P TP L P + P+ T
Sbjct: 718 PSTPSTPSAPGTPITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTLSMPSTPSMPNTPST 777
Query: 180 PSSLGMAKGVSPP 218
PS+ +S P
Sbjct: 778 PSTPSTPSTLSTP 790
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 3 PPSPA-ISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ +S ST S TP+TP S P+TP P PS T
Sbjct: 207 PSTPSTLSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPSTPST 266
Query: 180 PSS 188
PS+
Sbjct: 267 PST 269
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 3 PPSPA-ISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 179
P +P+ +S ST S TP+TP S P+TP P PS T
Sbjct: 757 PSTPSTLSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPSTPST 816
Query: 180 PSS 188
PS+
Sbjct: 817 PST 819
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
P +P+ +T + S PR TP+TP P TP P + P TP
Sbjct: 380 PCTPSTPSTPSTPSTPR--TPSTPSTPCTPSTPSTPSTPITPRTPSTPCTHSTPGTPSTP 437
Query: 183 SSLGMAKGVSPP 218
S+ S P
Sbjct: 438 STPSTPSTPSTP 449
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
P +P+ +T + P TP+TP S P TP P + PS TP
Sbjct: 497 PSTPSTPSTPSAPGTPG--TPSTPSTPSAPGTPSTPSTPSTPSTPSTPSTPSTPSMPSTP 554
Query: 183 SSLGMAKGVSPP 218
S+ S P
Sbjct: 555 STPSTPSTPSTP 566
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 33.1 bits (72), Expect = 0.19
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 6 PSPAISATSTRSSN-PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
P IS TS SS PR H PTTP T + P T P +S+APSA TP
Sbjct: 257 PQTTISITSIISSAIPRGHLPTTPSTTPQATPPST------TSQTTAPTASQAPSAGETP 310
>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
Length = 516
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 63 PTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDES 242
P TP S S P++P + P +P +PS LT + + ++P + +V++E
Sbjct: 51 PKTPSEPSDSPGPMSPEPEIMTPTPEPSPKHRSPSPKLTKTPTPPSWSLTPLHDEVDEEE 110
Query: 243 QAS 251
+ S
Sbjct: 111 EGS 113
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 123 FAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRLISR 266
FA P SS++PSA +P+S SP F + E + +IS+
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISK 1143
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 110
P+PA + T T+ + P HTPTTP T+ + TP
Sbjct: 94 PTPATTPTPTKPT-PTAHTPTTPTPTAHTPTKPTP 127
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 PPSPAISATST--RSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYL 176
PP+P T ++P + P+ ++T+ P P E + PP+ ++AP+
Sbjct: 32 PPAPPPEPTQAPVADTDPPTNPPSVVEVTTTQAPPPPPVVTEAPTTVPPPVVTDAPTTVP 91
Query: 177 TPSSLGMAKGVSPP 218
P V PP
Sbjct: 92 PPVVTDAPTTVPPP 105
>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 69 TPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQA 248
TP +S SI+ +P + L PP + P + LTP S ++ ++P +
Sbjct: 153 TPAGSSSSISLASPGMRSSLGSLTPPSRTSTPRSRLTPRSRSRSRTITPSTPSTTSSRAS 212
Query: 249 SR 254
SR
Sbjct: 213 SR 214
>SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16)
Length = 517
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 182
P PA++A ++ NP P++ D NP A G K S E P++ TP
Sbjct: 234 PSQPAVNAEGAKT-NPSLEPPSSED------NPAAV---AMADGAKTITSLETPTSEDTP 283
Query: 183 SSLGMAKG 206
+++ MA G
Sbjct: 284 AAVAMADG 291
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 60 TPTTPDLTSISINPLTPY*KEFAPGL---KPPLSSEAPSAYLTPSSLGMAKGVSPP 218
TPTTP T+ + P P E P L PP+ + P+ TP++ +PP
Sbjct: 897 TPTTPKPTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPP 952
>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 963
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 60 TPTTPDLTSISINPLTPY 113
TPT PD+T +SI L PY
Sbjct: 75 TPTRPDVTQLSITGLKPY 92
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 110
P P ++ S +S+NPR HTP P S + PLTP
Sbjct: 77 PRP-LTPPSRQSNNPRPHTP--PSCQSNTPRPLTP 108
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 304 PLIEDVVMATNQAIIDYKVEIADNNLVTHKE 396
P + +V A N+ + V I DNN+V E
Sbjct: 2469 PAVVEVTFAANEVVATISVPIVDNNIVEETE 2499
>SB_24975| Best HMM Match : ET (HMM E-Value=1)
Length = 316
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTT 71
P SP+ S T++ S P HTP T
Sbjct: 146 PQSPSASVTASVSVTPNIHTPVT 168
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 286 SPPPTHPLIEDVVMATNQAIIDYKVEIADNN 378
+P P HP+ ++ YK+ I DNN
Sbjct: 443 APKPCHPITNYYILYRMSTSTSYKIAITDNN 473
>SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 609 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQ 487
R+MA+ + + L GR R RE++ VLK P VV +
Sbjct: 30 RSMAQSFLSGISLDGRIMREPRTRERNDEKVLKPTPTVVTE 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,249,725
Number of Sequences: 59808
Number of extensions: 391172
Number of successful extensions: 1282
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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