Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n05
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 33 0.22
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 31 0.67
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 31 0.88
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 31 0.88
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 2.0
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical ... 29 3.6
AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical ... 28 4.7
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 6.2
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 6.2
Z81593-10|CAI94504.1| 349|Caenorhabditis elegans Hypothetical p... 27 8.2
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ... 27 8.2
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ... 27 8.2
AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical ... 27 8.2
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAYLT 179
P+P + T+T +NP TPTT + +I +P P + P S+ AP+A +
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547
Query: 180 PSSLGMAKGVSP 215
P+S A V P
Sbjct: 548 PTSPTTAPTVPP 559
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 31.1 bits (67), Expect = 0.67
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 185
P+P + T+T +NP TPTT TS N ++P+ + + AP +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548
Query: 186 SLGMAKGVSPP 218
+ S P
Sbjct: 549 TTPTHTTASQP 559
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.7 bits (66), Expect = 0.88
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 3 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 173
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666
Query: 174 LTPSSLGMAKGVSPPY 221
S SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 30.7 bits (66), Expect = 0.88
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 3 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 173
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673
Query: 174 LTPSSLGMAKGVSPPY 221
S SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP-GLKPPLSSEAPSAYLT 179
P S I++TS+ S+ P + T T + + E ++ SS +PS + T
Sbjct: 695 PDSTIITSTSSTSTRPGTSSTATDSPTMDDTSKTSTVTSEGTTLSIESTESSASPSDFTT 754
Query: 180 PSSLGMAKGVSPPYFQVNDESQAS 251
P +G VS Q + S +S
Sbjct: 755 PDFIGFTSSVSRTSEQYSSSSPSS 778
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTP 182
P+P I R PR TP L + I+P+ +F P + PP +P A P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570
Query: 183 SSLGMAKGVSPPYFQVNDESQASRLISR 266
++L S P V ++ ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTP 182
P+P I R PR TP L + I+P+ +F P + PP +P A P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570
Query: 183 SSLGMAKGVSPPYFQVNDESQASRLISR 266
++L S P V ++ ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598
>AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical
protein F49F1.1 protein.
Length = 265
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +3
Query: 6 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 167
P+ S ++ + P T TP+LT++++ P+T K + P +++ P+
Sbjct: 160 PATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213
>AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical
protein Y41G9A.5 protein.
Length = 402
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 9 SPAISATSTRSSNPRFHTPTTPD-LTSISINPLTP 110
SPAI +T+T +++P+ T TP+ +T++ + P
Sbjct: 270 SPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 144 PLSSEAPSAYLTPSSLGMAKGVSPP 218
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 144 PLSSEAPSAYLTPSSLGMAKGVSPP 218
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>Z81593-10|CAI94504.1| 349|Caenorhabditis elegans Hypothetical
protein T20B3.15 protein.
Length = 349
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 439 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSS 612
++D +C F+ + + YD I T + LS S AS+ S R L+ + V S
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFS 292
>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
protein 25, isoformb protein.
Length = 1130
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 162 EPLMTTEALTPARIPSNTAS 103
EP++++E L P R+PS T S
Sbjct: 877 EPILSSEVLQPTRLPSATTS 896
>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
protein 25, isoforma protein.
Length = 1237
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 162 EPLMTTEALTPARIPSNTAS 103
EP++++E L P R+PS T S
Sbjct: 984 EPILSSEVLQPTRLPSATTS 1003
>AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical
protein Y48C3A.8 protein.
Length = 291
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 3 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFA-PGLKPPLSSEAP 164
PP PA +A + + P + + ++NP TP + P PPLSS P
Sbjct: 168 PPPPAATAAVSMNGGGPGSAPGSAHSVNNNVNPGTPGSNPLSNPMSNPPLSSGPP 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,120
Number of Sequences: 27780
Number of extensions: 283886
Number of successful extensions: 1036
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -