Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n05
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 PSSLGMAKGVSPPYFQVNDESQASRLIS 263
           P+S+G++  VS P F+V    Q +  IS
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 201


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 PSSLGMAKGVSPPYFQVNDESQASRLIS 263
           P+S+G++  VS P F+V    Q +  IS
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 140


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/57 (19%), Positives = 21/57 (36%)
 Frame = +1

Query: 238 NHKLRALLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVEIADNNLVTHKELALK 408
           N     LL  +  + +    TH  +       N       +++ DN   T  ++A+K
Sbjct: 534 NKSFNDLLTQVAELDQIYADTHAKLVQAAFEQNTTDQSMDIDVCDNQTYTSLQMAMK 590


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = +2

Query: 26  YINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIR 127
           Y +P+  + + Y N  +     +Q  D   EG++
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 3   PPSPAISATSTRSSNPRFHTPTTPDLTSISINPL 104
           PPS   S    R   PR+++ +  D  S  + PL
Sbjct: 400 PPSRKESGRRRRRRTPRYNSVSKIDRASRIVFPL 433


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 295 PTHPLIEDVVMATNQAIIDYKV 360
           P H    D+V+ + Q   DYK+
Sbjct: 334 PLHDATRDLVLMSEQFEADYKL 355


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = +2

Query: 26  YINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIR 127
           Y +P+  + + Y N  +     +Q  D   EG++
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = +2

Query: 26  YINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIR 127
           Y +P+  + + Y N  +     +Q  D   EG++
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 63  PTTPDLTSISINPLTPY 113
           P  P+L S +I+ L PY
Sbjct: 654 PLPPNLASANISQLDPY 670


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 295 PTHPLIEDVVMATNQAIIDYKV 360
           P H    D+V+ + Q   DYK+
Sbjct: 334 PLHDATRDLVLMSEQFEADYKL 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,756
Number of Sequences: 438
Number of extensions: 4270
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)