Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n04
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 172 3e-44
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 33 0.032
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 3.6
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 4.8
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 6.3
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 6.3
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 6.3
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 8.4
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 172 bits (419), Expect = 3e-44
Identities = 87/178 (48%), Positives = 112/178 (62%), Gaps = 1/178 (0%)
Frame = +2
Query: 65 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDP-NVEVIVGVPAIYLSYVKTIIPDNVE 241
M RKF VGGN+KMNG + I+ L L+ +VE ++ +YL + + ++
Sbjct: 1 MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIG 60
Query: 242 VAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESG 421
V AQN + GA+TGE S + D G+ + + GHSERRTIF E DE VA+K ALE G
Sbjct: 61 VGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQG 120
Query: 422 LKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDXWENIVLAYEPVWAIGTGKTAT 595
L V+ACIGETL ERE+ +T VV RQL A+ + W IV+AYEPVWAIGTGKTAT
Sbjct: 121 LTVVACIGETLAEREANETINVVVRQLNAIADKV-QNWSKIVIAYEPVWAIGTGKTAT 177
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 33.1 bits (72), Expect = 0.032
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -3
Query: 373 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLH 212
F + ++ TK N + SN+F+H+ + T +SS T L IIRNDS H
Sbjct: 26 FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCL----KIIRNDSFH 75
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 588 VLPVPIAHTGS*ASTIFSHXSPMADTKAFNCLKTTSSVLPDSLSSRVSPIQAMTF 424
+LP I S A +F +P ++ F CL + +L L+S V +Q ++
Sbjct: 230 LLPRLIRKQLSDAPIVFFLHAPFCTSEVFRCLSKRAEILKGVLASNVIAMQTDSY 284
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 528 SPMADTKAFN-CLKTTSSVLPDSLSSRVSP 442
SP+ TK+FN L ++SS+L + S SP
Sbjct: 220 SPLTKTKSFNDALTSSSSILKPCMPSIASP 249
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 230 DNVEVAAQNCWKSPKGAFTGEISPA 304
D E A+ SP G+FT +ISPA
Sbjct: 752 DGHEQASPLVSSSPSGSFTSQISPA 776
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 6.3
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -3
Query: 319 NVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLHIRQVNSRNTNNYLNIRI*RSLF*I 140
N+FD + KS F + N +I DS ++ NT N SLF
Sbjct: 193 NIFDLDSGKWVFKSLFNHHCGIYRSNCVVINKDSEFLQMCRPINTTQDSNEHSIGSLFFY 252
Query: 139 INY-FVDLIFVTIHL 98
+NY FV++ I+L
Sbjct: 253 LNYNFVNVKRQVIYL 267
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 6.3
Identities = 23/83 (27%), Positives = 33/83 (39%)
Frame = +2
Query: 50 NKITEMGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIP 229
+ I E+ R+ + WK+ K + E+ K+G L +EV A +S VK I
Sbjct: 279 DSILEICRERLAPKGWKITEGKYSMKEVAQASKEGRL---LEVFGAGTAALVSPVKAINY 335
Query: 230 DNVEVAAQNCWKSPKGAFTGEIS 298
E G T EIS
Sbjct: 336 KGTEYEIPMPEGQEAGPITSEIS 358
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 215 KTIIPDNVEVAAQNCWKSPKGAFTG 289
+ +I D+V + Q+CWK + A G
Sbjct: 231 RIVIRDSVTLEPQHCWKHHRDAVMG 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,608
Number of Sequences: 5004
Number of extensions: 50499
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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