Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n04
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 210 5e-55
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 205 2e-53
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 189 1e-48
09_01_0088 + 1268120-1268139,1268288-1268361,1268500-1268750,126... 33 0.23
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 31 0.53
01_04_0083 - 15838922-15839065,15839153-15839443,15839555-158396... 31 0.92
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 29 3.7
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 3.7
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 28 4.9
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 6.5
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 6.5
09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486 27 8.6
08_02_0536 - 18302394-18302826,18302903-18303183,18303480-183037... 27 8.6
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 210 bits (514), Expect = 5e-55
Identities = 94/174 (54%), Positives = 125/174 (71%)
Frame = +2
Query: 74 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQ 253
KF VGGNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQ
Sbjct: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQ 113
Query: 254 NCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVI 433
N W GA+TGEIS + D+G WVILGHSERR + GE D+ + +K A+AL +KVI
Sbjct: 114 NVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVI 173
Query: 434 ACIGETLEERESGKTEEVVFRQLKALVSAIGDXWENIVLAYEPVWAIGTGKTAT 595
ACIGE LEERE+GKT +V F+Q+KA +I + W ++V+AYEPVWAIGTGK AT
Sbjct: 174 ACIGELLEEREAGKTFDVCFKQMKAFADSITN-WADVVIAYEPVWAIGTGKVAT 226
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 205 bits (500), Expect = 2e-53
Identities = 100/177 (56%), Positives = 123/177 (69%), Gaps = 2/177 (1%)
Frame = +2
Query: 71 RKFVVGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 244
RKF VGGNWK NG + +IV L + P + VEV+V P ++L VK ++ + V
Sbjct: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSV 63
Query: 245 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 424
AAQNCW GAFTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+
Sbjct: 64 AAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGI 123
Query: 425 KVIACIGETLEERESGKTEEVVFRQLKALVSAIGDXWENIVLAYEPVWAIGTGKTAT 595
KVIACIGETLE+RE+G T EVV Q KA+ I D W N+VLAYEPVWAIGTGK AT
Sbjct: 124 KVIACIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVAT 179
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 189 bits (461), Expect = 1e-48
Identities = 90/168 (53%), Positives = 121/168 (72%), Gaps = 2/168 (1%)
Frame = +2
Query: 98 KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 271
++NG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW
Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63
Query: 272 KGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGET 451
GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLKVIAC+GET
Sbjct: 64 GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGET 123
Query: 452 LEERESGKTEEVVFRQLKALVSAIGDXWENIVLAYEPVWAIGTGKTAT 595
LE+RESG T +VV Q KA+ I D W N+V+AYEPVWAIGTGK AT
Sbjct: 124 LEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVAT 170
>09_01_0088 +
1268120-1268139,1268288-1268361,1268500-1268750,
1268845-1269048,1269488-1269805,1269893-1269910
Length = 294
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 8 LQLIHDIC*KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNV 172
LQ H + +V S I+E+ RKF + G NW ++ ++ + + LKKG PN+
Sbjct: 95 LQWNHKLYKRVYYSKMISEVERKFAIDGRANNWILHQLDGKLRQYKSKLKKGYYKPNL 152
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 31.5 bits (68), Expect = 0.53
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +2
Query: 365 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDXWENI 544
F E+ EL VA ES L + +T EE ++ K ++ F + +ALV+A +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198
Query: 545 VLAY 556
LAY
Sbjct: 199 TLAY 202
>01_04_0083 -
15838922-15839065,15839153-15839443,15839555-15839653,
15839733-15839825,15839913-15840116,15840209-15840459,
15841045-15841096,15841527-15841625,15842222-15842299
Length = 436
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 8 LQLIHDIC*KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNVEV 178
LQ H + +V I+E+ RKF + G NW ++ + + + LKKG PN+ +
Sbjct: 140 LQWNHKLYKRVYHPKMISEVERKFAIDGRANNWNLHQLDGKWRQYKSKLKKGYYKPNLSM 199
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 28.7 bits (61), Expect = 3.7
Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 1/186 (0%)
Frame = +2
Query: 11 QLIHDIC*KVGSSNKITEMGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGV 190
Q+ H++C N G+ + ++G Q+ E+V + K +V++
Sbjct: 325 QMFHNLCFAWALFNHFVMSGQADIE----LLSGAGIQLTEVVKDAKTTKDPDYCDVLIST 380
Query: 191 PAIYLSYV-KTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIF 367
+ + K ++ + +A N S +G + +S A I ++ H R
Sbjct: 381 INSIMGWTEKRLLAYHETFSASNI-DSMQGIVSIGVSTAKILAEDIS-----HEYHRKRK 434
Query: 368 GEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDXWENIV 547
E D +V K+ + S L+ + +EE +S ++ L L AIGD
Sbjct: 435 QETDVVVHSKIETYIRSSLRT--AFAQKMEEADSKRSSRHPVPVLSILAKAIGDLATKEK 492
Query: 548 LAYEPV 565
Y PV
Sbjct: 493 TVYSPV 498
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 253 LGCNFDIIRNDSLHIRQVNSRNTNNYL 173
LG NF++ RND L I V +N L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +2
Query: 56 ITEMGRKFVVGGNWKMNGDKN-----QINEIVNNLKKG 154
+ ++ ++F+ GGN +NGD + I E+V L+KG
Sbjct: 709 LNKLAKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKG 746
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 491 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQ 339
++LPQ + ++ Q +Q L Q Q +Q QQQ QKL Q Q
Sbjct: 44 QKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQ 94
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 336 ITQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT 211
+T +SL +AG ISPV Q +TLSG + FT
Sbjct: 80 VTSLNLSSLGLAGSISPVIGNLTFLQSLDLFNNTLSGDVYFT 121
>09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486
Length = 256
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 332 VILGHSERRTIFGEKDELVAEKVAHALESGLKVIAC--IGETLEERESGKTEEVVFRQLK 505
V++G F E++E E + + G A IGE E E G EE V +LK
Sbjct: 30 VLMGKRRNEGFFIEEEEEEEEVLTESSSIGAPSPASSSIGENSGEEEGGDDEEEVESKLK 89
Query: 506 ALVSAIG 526
A +G
Sbjct: 90 AEDEQVG 96
>08_02_0536 -
18302394-18302826,18302903-18303183,18303480-18303747,
18303959-18303996,18304459-18304761
Length = 440
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 350 ERRTIFGEKDELVAEKVAHALESGLKVIACI 442
E+ I GE++ + EK+ A+ G K IA +
Sbjct: 307 EKSVIIGERNRVATEKIQEAINHGYKRIAVL 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,977,778
Number of Sequences: 37544
Number of extensions: 294946
Number of successful extensions: 685
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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