Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n04
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)              125   3e-29
SB_12178| Best HMM Match : TIM (HMM E-Value=0)                        124   4e-29
SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   9e-05
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   29   3.8  
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)               29   3.8  
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)                   28   5.0  
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)          28   6.6  
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              27   8.7  

>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score =  125 bits (301), Expect = 3e-29
 Identities = 70/140 (50%), Positives = 89/140 (63%)
 Frame = +2

Query: 176 VIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSER 355
           ++V  PA+YLSYV+     N+ VAAQNC+K   GA              ++W        
Sbjct: 218 IVVSPPALYLSYVRKAAKQNIGVAAQNCYKVASGA--------------LHW-------- 255

Query: 356 RTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDXW 535
               G+  +L+ EKVAHAL + +KVIACIGE L ERE+GKT+EVVFRQ+KA+   I D W
Sbjct: 256 ----GD--QLIGEKVAHALSANVKVIACIGELLSEREAGKTQEVVFRQIKAIADKISD-W 308

Query: 536 ENIVLAYEPVWAIGTGKTAT 595
             +V+AYEPVWAIGTGKTAT
Sbjct: 309 SKVVIAYEPVWAIGTGKTAT 328


>SB_12178| Best HMM Match : TIM (HMM E-Value=0)
          Length = 203

 Score =  124 bits (300), Expect = 4e-29
 Identities = 59/123 (47%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
 Frame = +2

Query: 230 DNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 409
           D++   AQNC +   GA+TGE+S AM+  +GVN+VI+GHSERR  F E +E +A+KV  A
Sbjct: 7   DHISTGAQNCHEKASGAYTGEVSAAMLAHLGVNYVIIGHSERREYFNESNEQLAQKVDAA 66

Query: 410 LESGLKVIACIGETLEERESGKTEEVVFRQLK-ALVSAIGDXWENIVLAYEPVWAIGTGK 586
           L + L+VI C GE+LE R++      V +Q+K +L     +  +N+V+AYEP+WAIGTG+
Sbjct: 67  LVNNLQVIFCCGESLEIRDADGQNNFVEQQIKESLFHLSEEQMKNVVVAYEPIWAIGTGR 126

Query: 587 TAT 595
           TA+
Sbjct: 127 TAS 129


>SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +2

Query: 65  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNV 172
           MGR+F VGGNWK+NG +  I E++    K  LD +V
Sbjct: 1   MGRRFFVGGNWKLNGSRASIQELLEAWGKADLDKSV 36



 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 167 NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGE 292
           + EV++  PA+Y  +++  +P    +A QN +K   GAFTGE
Sbjct: 79  DTEVVISPPAVYADFLRANMPAEFGLALQNVYKEGSGAFTGE 120


>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 333 TQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT*DR*IAGTPTITSTLG 163
           T  T   +II G +  +  PF      W  T+T+  + +F     + GTP  TS  G
Sbjct: 254 TWLTYIIMIILGHLVILSVPFFATSTAWTLTNTMHNLCMFLLLHYVKGTPFETSDQG 310


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 28/108 (25%), Positives = 48/108 (44%)
 Frame = -2

Query: 491  KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQV*PNLLQRL 312
            +QL Q  Q+   RE  Q +Q    Q    ++  QQQ HL  Q+    Q   +   + Q+ 
Sbjct: 1533 QQLQQQ-QLQRQRELQQQQQQQQQQQLQRQRELQQQQHLQQQRQLQQQQQYIEQKIRQQQ 1591

Query: 311  *S*RVKFHQ*KLLLETSNSSGLQLRHYQE**SSHKTGK*QEHQQLPQH 168
             + +   +Q +  +        QL+H Q+     +  + Q+ Q+LPQH
Sbjct: 1592 LAHQQYTNQQQQQILYQQQQ--QLQHQQQQQQLQQQQQLQQQQRLPQH 1637


>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
          Length = 814

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 28/108 (25%), Positives = 48/108 (44%)
 Frame = -2

Query: 491 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQV*PNLLQRL 312
           +QL Q  Q+   RE  Q +Q    Q    ++  QQQ HL  Q+    Q   +   + Q+ 
Sbjct: 187 QQLQQQ-QLQRQRELQQQQQQQQQQQLQRQRELQQQQHLQQQRQLQQQQQYIEQKIRQQQ 245

Query: 311 *S*RVKFHQ*KLLLETSNSSGLQLRHYQE**SSHKTGK*QEHQQLPQH 168
            + +   +Q +  +        QL+H Q+     +  + Q+ Q+LPQH
Sbjct: 246 LAHQQYTNQQQQQILYQQQQ--QLQHQQQQQQLQQQQQLQQQQRLPQH 291


>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
          Length = 889

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 281 FTGEISPAMIKDVGVNWVILGHSERRTIFGEKD-ELVAEKVAHALESGLKVIACIGETLE 457
           +  E+S A+  D      IL   E++ I  + + E+  E++AH +E   +V+A     LE
Sbjct: 116 YARELSEALAGDDHSKQNILNELEKKLISAQTEKEIALEELAHVIEQRDQVVAERDRALE 175

Query: 458 E 460
           E
Sbjct: 176 E 176


>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
          Length = 655

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = -3

Query: 499 LSKNNFLSLARFSLFESLTNTGNDFQARFKGMSNLFSNKFIFFTKNCSSFRMTKYNPIYS 320
           LS+   +SL   + F + T  G    A +     LF   F F+  +C      KY  +  
Sbjct: 429 LSEIICISLVLLTKFIAYTLMGLVLSAEYYSHVLLFIFTFAFYVWHCFCSVTAKYQQLLK 488

Query: 319 NVFDHS 302
             FDHS
Sbjct: 489 LTFDHS 494


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
 Frame = +2

Query: 122 INEIVNNLKKGPLDPNVEVIVG--VPAIYLSYVKTIIPDNVEVAAQNCWKS--PKGA--F 283
           ++ + N L  GPL PN  +I+   +  + L +V   + + V V     W    PKG   +
Sbjct: 367 MSAVKNYLIDGPLPPNTSLIMARVLAILILCFVPFAVSEYVRVCYYTNWSQYRPKGGTFW 426

Query: 284 TGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALES---GLKV-IACIGET 451
             +I P +   V  ++  +  +       EK++    K  +AL+     LK  IA  G T
Sbjct: 427 PEDIDPHLCTHVIHSFSKVNLTTHVMEKYEKNDFDLYKRINALKKINPKLKTQIAVGGWT 486

Query: 452 LEERESGKTEEVVFRQLKAL 511
            EE+ S  ++ V  ++ +A+
Sbjct: 487 HEEKNSPFSKMVATKEKRAI 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,740
Number of Sequences: 59808
Number of extensions: 342674
Number of successful extensions: 742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)