Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n04
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23081-1|AAA79846.1| 247|Caenorhabditis elegans triosephosphate... 240 6e-64
AL023828-10|CAA19447.1| 247|Caenorhabditis elegans Hypothetical... 240 6e-64
U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related... 32 0.36
U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related... 32 0.36
AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-relat... 32 0.36
U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math ... 29 2.5
U97011-5|AAO12451.1| 168|Caenorhabditis elegans Hypothetical pr... 29 3.3
U97011-4|AAQ65202.1| 273|Caenorhabditis elegans Hypothetical pr... 29 3.3
U97011-3|AAQ65201.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF047659-15|AAC04426.1| 493|Caenorhabditis elegans Hypothetical... 28 4.4
AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical ... 28 5.8
>U23081-1|AAA79846.1| 247|Caenorhabditis elegans triosephosphate
isomerase protein.
Length = 247
Score = 240 bits (587), Expect = 6e-64
Identities = 114/177 (64%), Positives = 138/177 (77%)
Frame = +2
Query: 65 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 244
M RKF VGGNWKMNGD ++ IV L + +V+V+V PA YL+Y K+ + V V
Sbjct: 1 MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 60
Query: 245 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 424
AAQNC+K PKGAFTGEISPAMIKD+G+ WVILGHSERR +FGE D L+AEK HALE+G+
Sbjct: 61 AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 120
Query: 425 KVIACIGETLEERESGKTEEVVFRQLKALVSAIGDXWENIVLAYEPVWAIGTGKTAT 595
KV+ CIGE LEERE+G T++V FRQL+A+V G WENIV+AYEPVWAIGTGKTA+
Sbjct: 121 KVVFCIGEKLEEREAGHTKDVNFRQLQAIVDK-GVSWENIVIAYEPVWAIGTGKTAS 176
>AL023828-10|CAA19447.1| 247|Caenorhabditis elegans Hypothetical
protein Y17G7B.7 protein.
Length = 247
Score = 240 bits (587), Expect = 6e-64
Identities = 114/177 (64%), Positives = 138/177 (77%)
Frame = +2
Query: 65 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 244
M RKF VGGNWKMNGD ++ IV L + +V+V+V PA YL+Y K+ + V V
Sbjct: 1 MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 60
Query: 245 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 424
AAQNC+K PKGAFTGEISPAMIKD+G+ WVILGHSERR +FGE D L+AEK HALE+G+
Sbjct: 61 AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 120
Query: 425 KVIACIGETLEERESGKTEEVVFRQLKALVSAIGDXWENIVLAYEPVWAIGTGKTAT 595
KV+ CIGE LEERE+G T++V FRQL+A+V G WENIV+AYEPVWAIGTGKTA+
Sbjct: 121 KVVFCIGEKLEEREAGHTKDVNFRQLQAIVDK-GVSWENIVIAYEPVWAIGTGKTAS 176
>U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related
protein protein1, isoform a protein.
Length = 705
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 116 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 241
++INE+V+ + K L P E++ + AI L+Y+ T P+ E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505
>U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related
protein protein1, isoform b protein.
Length = 712
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 116 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 241
++INE+V+ + K L P E++ + AI L+Y+ T P+ E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505
>AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-related
protein protein.
Length = 705
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 116 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 241
++INE+V+ + K L P E++ + AI L+Y+ T P+ E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505
>U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical
protein C27A2.4 protein.
Length = 678
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 340 KYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGC 245
K N ++S + +H+G + +FWR+P L C
Sbjct: 171 KVNSLFSKLSEHTG-EVINADNFWRIPDTLRC 201
>AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math
domain containingprotein 47 protein.
Length = 683
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 107 GDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIP 229
GD N I+++++ +EV+ G PAI+ + V+ I+P
Sbjct: 47 GDSNYQEHIISDVEPQDFQKFLEVVHGEPAIFEATVQKILP 87
>U97011-5|AAO12451.1| 168|Caenorhabditis elegans Hypothetical
protein F31F7.1b protein.
Length = 168
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -3
Query: 481 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 317
L+L R S + L + GN + + R +G+SN LF K NC+ F K +P+Y+
Sbjct: 73 LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132
Query: 316 VFDHSG*NFTSKSSFWRL 263
F NF + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145
>U97011-4|AAQ65202.1| 273|Caenorhabditis elegans Hypothetical
protein F31F7.1c protein.
Length = 273
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -3
Query: 481 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 317
L+L R S + L + GN + + R +G+SN LF K NC+ F K +P+Y+
Sbjct: 73 LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132
Query: 316 VFDHSG*NFTSKSSFWRL 263
F NF + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145
>U97011-3|AAQ65201.1| 316|Caenorhabditis elegans Hypothetical
protein F31F7.1a protein.
Length = 316
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -3
Query: 481 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 317
L+L R S + L + GN + + R +G+SN LF K NC+ F K +P+Y+
Sbjct: 73 LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132
Query: 316 VFDHSG*NFTSKSSFWRL 263
F NF + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145
>AF047659-15|AAC04426.1| 493|Caenorhabditis elegans Hypothetical
protein K07H8.1 protein.
Length = 493
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 453 SKRENLARLRKLFLDN*KL*YRPLVTNGK-ILCLPMNLYGLLV 578
+K+ N+ +L + LDN + + P + + ILC +NLYG L+
Sbjct: 112 AKQSNIEKLINIVLDNRSVGFPPSSDSPQFILCRELNLYGNLL 154
>AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical
protein C49G7.7 protein.
Length = 893
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 95 WKMNGDKNQINEIVNNLKKGPLDPNVEVI 181
W++NGD+ ++EI N+ LD +V VI
Sbjct: 83 WEINGDRETLSEIQNHNSYRDLDMDVLVI 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,046
Number of Sequences: 27780
Number of extensions: 278672
Number of successful extensions: 913
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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