Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n03
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89) 30 1.9
SB_30186| Best HMM Match : DUF1272 (HMM E-Value=8) 30 1.9
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14) 29 2.5
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28) 29 4.3
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_41586| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0) 28 7.6
SB_5300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_21258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_16965| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
Length = 1354
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +1
Query: 229 SFENQANNTDNIHN--VKNIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMC 402
+F N N+ N +IFS +EF++ P R + L + P D+D +
Sbjct: 728 AFVTDTKNMANLLNRHFHHIFSPSASEEFVRAQPNNREPLLGLGSIQLTVPEADLDSLYS 787
Query: 403 QSCKPANKIQCFECKCRYLASSLST 477
S + + +CK +++ ST
Sbjct: 788 WSLEHGMEFSASKCKVVHMSKKRST 812
>SB_30186| Best HMM Match : DUF1272 (HMM E-Value=8)
Length = 162
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 1 EGYIECTMCAYRLQYSLRFNTYDRFENVCFEAQLLRDEIDSLC 129
EGY +C C R+ + RFE CF ++ + +C
Sbjct: 6 EGYYDCPFCDLRIAEYVTKGESARFEACCFRQDMVNENGADIC 48
>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
Length = 1087
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 EGYIECTMCAYRLQYSLRFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKG 180
EGY +C C R+ + +RFE C ++ D + F+ + N+ V G G
Sbjct: 297 EGYYDCPFCDLRIAECVTKEDSERFEACCGRQDMVNDNGANRKFIDT--VNKITEVSGNG 354
Query: 181 -LTFFTEFNKCIVSIKSSF 234
L E +C ++KS F
Sbjct: 355 RLRMVGECGEC-GAMKSKF 372
>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
Length = 647
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 314 NKCPNLGPLCNTCKHITIRR 373
NK PNLG LC TC+ +R
Sbjct: 470 NKAPNLGGLCRTCEIFGAKR 489
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 294 FARRVHQTSAPI*DHYAILANILQSDAGTRRGRDHVSVVQ-ARKQNSMFRVQMQILGVLA 470
F R HQ + Y + I +SD G RGR VS+ Q R + M LG
Sbjct: 124 FEERKHQRDYV--EFYMDKSGICESDIGRIRGRQTVSLGQGCRNPGHVTHELMHTLGFYH 181
Query: 471 EHPR 482
EH R
Sbjct: 182 EHTR 185
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 290 YFCATSSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANADTWR 463
Y CAT+ + K P GP KHI +R P + A T S A++D ++
Sbjct: 4805 YLCATTHT-KLPGFGPQVIRIKHIVRPKRPPKPQIDTIFNAIEPTGPTKSCAHSDIFK 4861
>SB_41586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 1 EGYIECTMCAYRLQYSLRFNTYDRFENVCFEAQLLRD 111
EGY +C C R+ + +RFE C ++ D
Sbjct: 6 EGYYDCPFCDLRIAECVTKEDSERFEACCGRQDMVND 42
>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1457
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 238 NQANNTDNIHNVKNIFSI 291
N NNTDNI+N+ NI +I
Sbjct: 1375 NNINNTDNINNIDNIDNI 1392
>SB_5300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 208 CIVSIKSSFENQANNTDNIHNVKNIFSIFLR-DEFIKQVPQFRTIMQYLQT 357
C + S E++ NN +NI+ + N+ F+R F+K + +R + +T
Sbjct: 118 CQKTSSSLDESEENNINNIYQMNNLKLTFIRLTHFMKPLSPYRVLPSIYRT 168
>SB_21258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 164 IKLWLKYFENKKHNESISSRNNCASKHTFSKRSYVLNLKLYCNL 33
IKLWLK N +NE +S + + A + +K + +K +L
Sbjct: 361 IKLWLKLSNNNGNNEKLSRKASAAISNYENKNFWHRKIKQILHL 404
>SB_16965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 281 FFRYFCATSSSNKCP 325
FFRY+C+ S S CP
Sbjct: 36 FFRYYCSISQSEHCP 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,070,671
Number of Sequences: 59808
Number of extensions: 427660
Number of successful extensions: 1274
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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