Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n02
         (635 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome sh...    36   1.1  
UniRef50_UPI00006A16D5 Cluster: UPI00006A16D5 related cluster; n...    35   1.4  
UniRef50_A7F8S9 Cluster: Predicted protein; n=1; Sclerotinia scl...    33   4.4  
UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome s...    33   5.8  
UniRef50_Q75DX0 Cluster: ABL097Cp; n=1; Eremothecium gossypii|Re...    33   5.8  
UniRef50_Q5F7X7 Cluster: Putative uncharacterized protein; n=1; ...    33   7.6  

>UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome shotgun
            sequence; n=3; Clupeocephala|Rep: Chromosome 5 SCAF14581,
            whole genome shotgun sequence - Tetraodon nigroviridis
            (Green puffer)
          Length = 991

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -1

Query: 611  PADLYDAVPGYSGAHASPPSTETVAAGGKNKCAWRSVQECDSVLRLDGTGKVVINLT 441
            P  L  A P YSG H SPP     + G  ++      Q  DS+ +LDG+    + L+
Sbjct: 861  PMHLSPATPHYSGHH-SPPLLNQTSNGNPSQAVLEFAQYLDSLFKLDGSSSPPLELS 916


>UniRef50_UPI00006A16D5 Cluster: UPI00006A16D5 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A16D5 UniRef100 entry -
           Xenopus tropicalis
          Length = 327

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 267 NILIDAVMTARIFDLGVCCNYHRRDRAVCRKCKT 368
           NILID+   A++ D G+C   HRRD  V   C T
Sbjct: 179 NILIDSTGYAKLADFGLCVKVHRRDGRVTGCCGT 212


>UniRef50_A7F8S9 Cluster: Predicted protein; n=1; Sclerotinia
           sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
           sclerotiorum 1980
          Length = 267

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 499 CTERHAHLFLPPAATVSVEGGDACAPEYPGTASYKSAGV 615
           C E H+   LPPA   S+EG     P++ G  SY +AGV
Sbjct: 153 CEEIHSRAELPPAHRASIEGARR-FPDHLGLISYDTAGV 190


>UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=5; Tetraodontidae|Rep: Chromosome 17
           SCAF14563, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 760

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 535 LEAKISARGVRYKSATAYCD*TVPVK-WSLISRSHEYNYVLNNGSTELCQETSCGVGV 365
           ++  ++ RG+R K     C      K WSL     +Y++V NN ST++    S  +GV
Sbjct: 387 IDVAVTYRGIRRKGNANECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGV 444


>UniRef50_Q75DX0 Cluster: ABL097Cp; n=1; Eremothecium gossypii|Rep:
           ABL097Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 119

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 321 CNYHRRDRAVCRKCKTPTPQDVSWHSSVE 407
           C++ +RD AVC K K P  QD+  H S +
Sbjct: 37  CDFRQRDLAVCIKQKVPVVQDIMKHCSAQ 65


>UniRef50_Q5F7X7 Cluster: Putative uncharacterized protein; n=1;
           Neisseria gonorrhoeae FA 1090|Rep: Putative
           uncharacterized protein - Neisseria gonorrhoeae (strain
           ATCC 700825 / FA 1090)
          Length = 114

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 520 LFLPPAATVSVEGGDACAPEYPGTASYKSAGVCSS 624
           L LPP+ T+   G D  A  +P    Y S+G+CSS
Sbjct: 26  LILPPSRTLVQTGTDDTARAFPVFTGYPSSGLCSS 60


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,983,789
Number of Sequences: 1657284
Number of extensions: 12452468
Number of successful extensions: 33254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33244
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)