Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n02
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   4.0  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.0  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   4.0  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   6.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   9.1  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   9.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.1  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 321 CNYHRRDRAVCRKCKTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 485
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -1

Query: 353 THSTIATMIIATNS*IKNSSGHDSVDENVRACIFYIDVPSLFKSTWFYPTS 201
           +HS+ +++ I  +S + N++ H SV ++ ++  F + VPS   ST  Y TS
Sbjct: 474 SHSSASSLPITPSSYLSNTTLHSSV-QSSQSSQFTVSVPS---STQSYSTS 520


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +1

Query: 415 LEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGDACAPEYPGTA 594
           L H+ T +       + +PS   T +++ +  H+ L  P A+T++     A     P  A
Sbjct: 401 LNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLA 460

Query: 595 SYKSA 609
           ++ S+
Sbjct: 461 NHLSS 465


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 469 PSNRNTLSHSCTERHAHLFLPP 534
           P++    SH C   H+HL  PP
Sbjct: 617 PASVKLTSHKCNHLHSHLDKPP 638


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 151 QNWPNYISLN*QNF*PNDFNLLLTKTVKITQVPNMFQQEPHRRTPRTKKE 2
           QN P   S+  ++    D N+  +K   I  +PN FQ+  +  T   K E
Sbjct: 482 QNVPQMSSVK-KDTPTRDANMRTSKAPYIQNIPNQFQRRAYSATIPVKNE 530


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 463 PVPSNRNTLSHSCTERHA 516
           P+PSN  TL  S  +RHA
Sbjct: 385 PIPSNVETLRSSLPQRHA 402


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +1

Query: 403  WNRCLEHNYTREI--VRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGDACAP 576
            WN  +   Y+  I  +R +    +P N   L           FL P+ T +V GG+    
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 577  EYPGTASYKSAGVCSSA 627
            +       K+  +C+++
Sbjct: 1076 QRITDVILKAFSICAAS 1092


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 120  NKTSNQMISIYY*RKLLKLHKSQTCFNKNRTDERHAQKK 4
            +K + Q + + Y +K L++   ++C    +T+E H  KK
Sbjct: 1289 SKATEQCLMVKYIKKDLEIEIEESCDFSIQTEEIHLYKK 1327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,503
Number of Sequences: 5004
Number of extensions: 53182
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)