Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n02
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221... 32 0.44
12_02_0436 - 19076486-19076609,19076860-19076944,19077321-190774... 30 1.3
03_05_1070 + 30125131-30127029 28 5.4
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 28 5.4
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 7.1
10_01_0355 + 3912019-3913046,3914354-3914678 27 9.4
10_01_0287 - 2982618-2982810,2983111-2983196 27 9.4
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 27 9.4
>11_01_0295 +
2217496-2218092,2218774-2218876,2219140-2219249,
2219328-2219399,2219653-2219814,2220300-2220510,
2220613-2220948,2221050-2221162
Length = 567
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 611 PADLYDAVPGYSGAHASPPSTETVAAGGKNKCAWRSVQE 495
PADL D + G G+H P ST+ G + A + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159
>12_02_0436 -
19076486-19076609,19076860-19076944,19077321-19077486,
19078213-19078889,19079372-19079475,19079582-19079817
Length = 463
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 258 TGANILIDAVMTARIFDLGVCCNYHRRDRAVCRKCKTPTP 377
T +NILID TAR+ D G ++ RR R R+C +P P
Sbjct: 179 TASNILIDNDFTARLGDFGY--SWSRRFR---RRCTSPAP 213
>03_05_1070 + 30125131-30127029
Length = 632
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 539 AAGGKNKCAWRSVQECDS-VLRLD 471
A GG+ + AWRS DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 415 LEHNYTREIVRLMTTLPVPSNRNTLS 492
L+H TR+++ L PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 341 IATMIIATNS*IKNSSGHDSVDENVRACIFY 249
+AT I S +SSGHD VD N I+Y
Sbjct: 1233 LATSIARNTSEGLSSSGHDPVDSNAENDIYY 1263
>10_01_0355 + 3912019-3913046,3914354-3914678
Length = 450
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 499 CTERHAHLFLPPAATVSVEGGDACAPEYPGTASYKSAGVCSS 624
C +R HL + AAT++V G DA P P ++ A CSS
Sbjct: 187 CNDR-GHLTIFDAATLAVLG-DAAPPPPPPVTLHRDAFKCSS 226
>10_01_0287 - 2982618-2982810,2983111-2983196
Length = 92
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -2
Query: 622 CYTHPPICMTLFQGTQVHMRHP 557
CY H P+ L G Q+ HP
Sbjct: 38 CYIHKPVYQELLHGDQLRFTHP 59
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +1
Query: 463 PVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGDACAP 576
P PS HS RH H PP A + GG AP
Sbjct: 117 PSPSPSQYDHHSSDHRHGHGHHPPHAGYNCGGGGRRAP 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,234,354
Number of Sequences: 37544
Number of extensions: 348322
Number of successful extensions: 1406
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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