Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n02
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.34 
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)                   27   9.7  
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)      27   9.7  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 418 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAHL 522
           EH +T +I +L  T+P     NTL   C +RHA L
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -1

Query: 623  LLHTPADLYDAVPGYSGAHASPPSTETVAAGGKNKCAWRSVQECDSVLRLDGT 465
            L  TP    D +PGY  +  S   TE   A  K K A++ V +   V RL  T
Sbjct: 1894 LEQTPPPTSDRIPGYEDSEGS--DTENEQAITKRKTAFQDVSDVHGVARLQDT 1944


>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 625 HCYTHPPICMTLFQGTQVHMRHPLRRKPLLLEA 527
           HC  HP I +TL   T  H  HP     LLL +
Sbjct: 654 HC-EHPAIAITLLLRTPCHCEHPAIANILLLRS 685


>SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)
          Length = 152

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 463 VKWSLISRSHEYNYVLNNGSTELCQETS 380
           V+W +I  S  Y+     GS +LC +TS
Sbjct: 58  VQWIIIPLSSHYSERTGKGSAQLCSQTS 85


>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
          Length = 851

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 364 RHLRRRMSPGIVPWNRCLEHNYTREIVRLMTTLPVPSNRNTLSHSCTER 510
           RHL   ++ GI P +   +H     ++RLM  LP    +   + SC E+
Sbjct: 443 RHLVVSVAAGI-PLSSFSKHYGLERVIRLMPNLPCSVKQGAAAFSCGEK 490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,540,402
Number of Sequences: 59808
Number of extensions: 424651
Number of successful extensions: 1262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)