Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n02
         (635 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse t...    23   8.1  
AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse t...    23   8.1  
AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse t...    23   8.1  

>AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -1

Query: 374 RRCLALSTHSTIATMIIATNS*IKNSSGHDSVDENVRACIFYIDVPSLF 228
           R  ++ + H  +      TN     SS H S+D  ++  + Y D+ + F
Sbjct: 28  RNYISPNQHGFVPNRSTTTNLMQFVSSCHKSIDARLQVDVIYTDLKAAF 76


>AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -1

Query: 374 RRCLALSTHSTIATMIIATNS*IKNSSGHDSVDENVRACIFYIDVPSLF 228
           R  ++ + H  +      TN     SS H S+D  ++  + Y D+ + F
Sbjct: 28  RNYISPNQHGFVPNRSTTTNLMQFVSSCHKSIDARLQVDVIYTDLKAAF 76


>AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -1

Query: 374 RRCLALSTHSTIATMIIATNS*IKNSSGHDSVDENVRACIFYIDVPSLF 228
           R  ++ + H  +      TN     SS H S+D  ++  + Y D+ + F
Sbjct: 28  RNYISPNQHGFVPNRSTTTNLMQFVSSCHKSIDARLQVDVIYTDLKAAF 76


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,315
Number of Sequences: 2352
Number of extensions: 14345
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)