Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n02
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U29487-1|AAA68768.1|  253|Caenorhabditis elegans 2 (zwei) ig-dom...    28   4.9  
U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily ass...    28   4.9  
AF456251-1|AAL59609.1|  253|Caenorhabditis elegans secreted 2-im...    28   4.9  
Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase ...    27   8.5  

>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 617 HTPADLYDAVPGYSGAHASPPSTETVAAGGKNKCAWRSVQE 495
           + P   Y+ VP Y       P TE+    G +   W SV+E
Sbjct: 25  YVPPQGYEGVPRYRAIDPDRPKTESSEMSGADHLEWESVKE 65


>U29487-1|AAA68768.1|  253|Caenorhabditis elegans 2 (zwei) ig-domain
           protein protein4 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 439 IVRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEG 558
           IV  + T+  PS  N+ ++SC   + H  +   A V +EG
Sbjct: 110 IVASILTIQCPSAENSGTYSCVGYNGHQTIETVAEVEIEG 149


>U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 161 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 264 ANILIDAVMTARIFDLGVCCNYHRR 338
           ANIL+D     R+ DLG+ C+Y ++
Sbjct: 322 ANILLDENGHVRVSDLGLACDYSKK 346


>AF456251-1|AAL59609.1|  253|Caenorhabditis elegans secreted
           2-immunoglobulin-domainprotein ZIG-4 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 439 IVRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEG 558
           IV  + T+  PS  N+ ++SC   + H  +   A V +EG
Sbjct: 110 IVASILTIQCPSAENSGTYSCVGYNGHQTIETVAEVEIEG 149


>Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 267 NILIDAVMTARIFDLGVCCNYHRRDRAVCRKCKTP 371
           NIL+DA    R+ D G+C     +D      C TP
Sbjct: 507 NILLDAEGHCRLADFGMCKEGINKDNLTSTFCGTP 541


>Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 267 NILIDAVMTARIFDLGVCCNYHRRDRAVCRKCKTP 371
           NIL+DA    R+ D G+C     +D      C TP
Sbjct: 507 NILLDAEGHCRLADFGMCKEGINKDNLTSTFCGTP 541


>Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical
           protein ZK938.3 protein.
          Length = 660

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 233 LFKSTWFYPTSDIIDQK*GS*QKEINNTE 147
           L K+ +F+PTSD+ D K  +   ++NN E
Sbjct: 376 LLKTHFFFPTSDLTDIKPSALPIDLNNQE 404


>U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase C
           protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 267 NILIDAVMTARIFDLGVCCNYHRRDRAVCRKCKTP 371
           NIL+DA    R+ D G+C     +D      C TP
Sbjct: 507 NILLDAEGHCRLADFGMCKEGINKDNLTSTFCGTP 541


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,000
Number of Sequences: 27780
Number of extensions: 313864
Number of successful extensions: 913
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)