Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19n01
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    30   0.28 
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    29   0.64 
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   1.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   4.5  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   7.8  

>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 526 HMPNDSIIGIDRLITDRFPSISSKNAYLLSATPIIDNTNTIRYANNN 666
           H PND++  ID L  DR    S K    L    I++N ++I   +++
Sbjct: 51  HKPNDALFVIDTLGDDRIAKRSRKKIKPLKVDQILENKSSIEKVHSH 97


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 272 WNSIVYLEIDYENAEILSQNCVYENL 195
           W +I+  +  Y+NAE + +NC+  NL
Sbjct: 21  WQAILNYKYIYQNAEAVQRNCINRNL 46


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -3

Query: 251 EIDYENAEILSQNCVY-ENLYKK--CIMCRAIVRDHEPTVFNQNYSVIIMGVLTIL 93
           +I+ E+AE LS  C++  N Y+   C     IV D +     ++YS+ + G + ++
Sbjct: 217 DINDEDAEPLSVECIFCTNFYEPVFCFEHCKIVHDWDIKKIQKDYSLDVYGAIRVI 272


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 63  LHVQIPALHS*YRKHAHYDYGIVLIKHGRLVIPYNRSAHD 182
           L+ Q+P  HS + K + ++ G  ++KH  L + Y    HD
Sbjct: 529 LNNQLPTKHSQFYKKSRFNDGSFMVKHYALDVSY--QVHD 566


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 185 CIMCRAIVRDHEPTVFNQNYSVIIMGVLTILAVQC 81
           CI+  AI++ +    FN+N++    G+L+     C
Sbjct: 622 CILSSAIIKMYLDFEFNENFNATTFGLLSSFTKHC 656


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 314  LDVLYRHYDLESVCWNSIVYLEIDYE 237
            L +L ++ +  S+CW  IVYL  D++
Sbjct: 1234 LRLLKKYLNDVSICWEQIVYLVQDFQ 1259


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 614 DNRYAFLLEIEGKRSVINLSIPIMLSFGMWILFYTFYFVW 495
           + RYA L+   G + +    +P+M++ G  +    F F W
Sbjct: 348 NQRYAKLITANGGKPLPEQRLPLMMAVGWLMPAGIFVFAW 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,362
Number of Sequences: 5004
Number of extensions: 69736
Number of successful extensions: 201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)