Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19n01
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50742-2|CAA90616.1| 491|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF036706-18|AAK39278.1| 448|Caenorhabditis elegans Enhanced rna... 30 1.8
AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rna... 30 1.8
U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched fami... 29 4.2
Z82057-5|CAB04861.3| 325|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81533-1|CAB04334.1| 329|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81142-11|CAB03512.3| 325|Caenorhabditis elegans Hypothetical p... 28 5.5
U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical pr... 28 5.5
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 28 5.5
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 28 5.5
Z82051-5|CAB04813.1| 216|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 28 7.3
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 7.3
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 7.3
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 28 7.3
AF016657-1|AAB93653.1| 361|Caenorhabditis elegans Hypothetical ... 28 7.3
Z81508-6|CAB04147.1| 338|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z81489-12|CAJ30224.1| 142|Caenorhabditis elegans Hypothetical p... 27 9.7
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 27 9.7
>Z50742-2|CAA90616.1| 491|Caenorhabditis elegans Hypothetical
protein K09A11.2 protein.
Length = 491
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 545 MLSFGMWILFYTFYFVWKIVVWTK 474
+L+F ++I+FY F+F WK+ + K
Sbjct: 5 ILAFVIFIIFYVFHFYWKVSKYPK 28
>AF036706-18|AAK39278.1| 448|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform a protein.
Length = 448
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 477 EKSHRLFKHKCKFQCGKKLLRRYHVYYGKRDHWAVLDAVCRVSNLRV 337
E RL+ KF G+K R V G D W + C +SN+R+
Sbjct: 225 EALQRLYTWMRKFNLGQKNSRFAFVTDGPHDMWKFMQFQCLLSNIRM 271
>AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform b protein.
Length = 582
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 477 EKSHRLFKHKCKFQCGKKLLRRYHVYYGKRDHWAVLDAVCRVSNLRV 337
E RL+ KF G+K R V G D W + C +SN+R+
Sbjct: 225 EALQRLYTWMRKFNLGQKNSRFAFVTDGPHDMWKFMQFQCLLSNIRM 271
>U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched family
protein 2 protein.
Length = 936
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 348 LKRGKQHPTQPSDHVYHNTRDSDVKVFFRIEIYIC 452
L RG + P + H Y ++ ++ +FR I+IC
Sbjct: 502 LSRGDEEPEKIESHSYFASKITETTHYFRFGIFIC 536
>Z82057-5|CAB04861.3| 325|Caenorhabditis elegans Hypothetical
protein ZK1037.11 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -3
Query: 638 VLSIMGVADNRYAFLLEIEGKRSVINLSIPIMLSFGM-WILFYTFYFVWKIVVWTKNRIG 462
+LSI+ + Y + KR + PI+ F + YTF F+ ++ W +
Sbjct: 36 LLSILIIIFPLYIIVYRKNRKREKNLPTFPIVSHFHKATVKSYTFLFI--LIFWLA--LA 91
Query: 461 SSNTNVNFNAEKNFYVAITCIMVNVITGLCWMLFAAFQIYVF 336
+ + +VNF + + I++ + + +L F IY F
Sbjct: 92 TFSDSVNFGIVTIIILTVVVIIIAITNEVNELLIGIFSIYTF 133
>Z81533-1|CAB04334.1| 329|Caenorhabditis elegans Hypothetical
protein F36G9.2 protein.
Length = 329
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 524 ILFYTFYFVWKIVVWTKNRIGSSNTNVNFNAEKNFYVAI 408
ILF+ FY WKI+ K R S T FN ++ +A+
Sbjct: 210 ILFFFFYIYWKILKQLKARSMSKRT---FNLQRVLLIAL 245
>Z81142-11|CAB03512.3| 325|Caenorhabditis elegans Hypothetical
protein ZK1037.11 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -3
Query: 638 VLSIMGVADNRYAFLLEIEGKRSVINLSIPIMLSFGM-WILFYTFYFVWKIVVWTKNRIG 462
+LSI+ + Y + KR + PI+ F + YTF F+ ++ W +
Sbjct: 36 LLSILIIIFPLYIIVYRKNRKREKNLPTFPIVSHFHKATVKSYTFLFI--LIFWLA--LA 91
Query: 461 SSNTNVNFNAEKNFYVAITCIMVNVITGLCWMLFAAFQIYVF 336
+ + +VNF + + I++ + + +L F IY F
Sbjct: 92 TFSDSVNFGIVTIIILTVVVIIIAITNEVNELLIGIFSIYTF 133
>U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical
protein R08C7.9 protein.
Length = 341
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 182 IMCRAIVRDHEPTVFNQNYSVIIMGVLTILAVQCWNL-YVQLKEMRRNIYIK 30
I+C+ I H P N V++ G+L AV WN+ + LK++ NI++K
Sbjct: 221 ILCQFIHSVHLPAKLFSNVRVLLDGLLIADAVLLWNMDKMCLKDV--NIFLK 270
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -3
Query: 215 NCVYENLYKKCIMCRAIVRDHEPTVFNQNYSVIIMGVLTILAVQCWNLYVQ-LKEMRRNI 39
+C+ ++ C+ R R + ++F +N VII GV+T ++ + +LY++ + + R I
Sbjct: 14 SCIVWTVFSSCLKPRP-TRSYIHSLF-ENSDVIIAGVITGISYRVDSLYIENITVIPRRI 71
Query: 38 Y 36
Y
Sbjct: 72 Y 72
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -3
Query: 215 NCVYENLYKKCIMCRAIVRDHEPTVFNQNYSVIIMGVLTILAVQCWNLYVQ-LKEMRRNI 39
+C+ ++ C+ R R + ++F +N VII GV+T ++ + +LY++ + + R I
Sbjct: 14 SCIVWTVFSSCLKPRP-TRSYIHSLF-ENSDVIIAGVITGISYRVDSLYIENITVIPRRI 71
Query: 38 Y 36
Y
Sbjct: 72 Y 72
>Z82051-5|CAB04813.1| 216|Caenorhabditis elegans Hypothetical
protein T23D5.8 protein.
Length = 216
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 517 NNIHMPNDSIIGIDRLITDRFPSISSKNAYLLSATPIIDNTNTIR 651
NN+H+ N S G+++ DR PS+ AY L ++ TIR
Sbjct: 161 NNLHISNLSHTGLEKYSPDRHPSVLV--AYTLLRIHLLRPVYTIR 203
>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = -2
Query: 573 IGYQSIYTDNAVVRHVDIILHVLFCMEDCRVDEKSHRLFKHKCKFQCGKKLLRRYHVYYG 394
+ ++++ DN V D +LH L + R+ K+ +F + F +L+R
Sbjct: 1206 VANRNLFRDNTVS---DDVLHSLSML--LRLSPKALFIFSRQIAFGL-YELIRANAANVH 1259
Query: 393 KRDHWAVLDAVCRVSNLRV 337
K++HWAVL A+ + V
Sbjct: 1260 KKEHWAVLFALLEAAGAAV 1278
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 191 CKGSHIHSFGSRFRHFRSQFPNTR*SSSTPIPNRS 295
C SH+ S + H FPNT S+S+ + N S
Sbjct: 704 CHSSHVTSNSTHSTHISVSFPNTVTSASSILSNSS 738
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 191 CKGSHIHSFGSRFRHFRSQFPNTR*SSSTPIPNRS 295
C SH+ S + H FPNT S+S+ + N S
Sbjct: 704 CHSSHVTSNSTHSTHISVSFPNTVTSASSILSNSS 738
>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = -2
Query: 573 IGYQSIYTDNAVVRHVDIILHVLFCMEDCRVDEKSHRLFKHKCKFQCGKKLLRRYHVYYG 394
+ ++++ DN V D +LH L + R+ K+ +F + F +L+R
Sbjct: 1206 VANRNLFRDNTVS---DDVLHSLSML--LRLSPKALFIFSRQIAFGL-YELIRANAANVH 1259
Query: 393 KRDHWAVLDAVCRVSNLRV 337
K++HWAVL A+ + V
Sbjct: 1260 KKEHWAVLFALLEAAGAAV 1278
>AF016657-1|AAB93653.1| 361|Caenorhabditis elegans Hypothetical
protein C16C4.7 protein.
Length = 361
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 196 RFSYTQFWLKISAFS*SISKYTIEFQHT 279
RFSY++ WL IS F +I + FQH+
Sbjct: 181 RFSYSRIWLHISIFDSNI-PFMAVFQHS 207
>Z81508-6|CAB04147.1| 338|Caenorhabditis elegans Hypothetical
protein F20E11.10 protein.
Length = 338
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -3
Query: 524 ILFYTFYFVWKIVVWTKNRIGSSNTNVNFNAEKNFYVAITCIMVNVITGLCWMLFAAFQI 345
ILFY Y +W + K S T F +K F AI I+ + + +C+++
Sbjct: 212 ILFYLMYLIWNSIKQLKENKMSQKT---FQLQKQFLFAI--IVQSSVQMICFIIPLLTFW 266
Query: 344 YVFKNGH 324
+ F G+
Sbjct: 267 FAFLEGY 273
>Z81489-12|CAJ30224.1| 142|Caenorhabditis elegans Hypothetical
protein C55A1.15 protein.
Length = 142
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = -3
Query: 602 AFLLEIEGKRSVINLSIPIML--SFGMWILFYTFYFVWKIVVW 480
+ +L + K ++N+ IP+++ FG++IL YT V+ ++++
Sbjct: 83 SIILSVFEKLYLLNVIIPVIVFFCFGLFILLYTITQVFHVLIF 125
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 312 RCFISSLRFGIGVLELYRVFG 250
R FI++L F +G +LY VFG
Sbjct: 189 RIFIANLAFNVGTDKLYEVFG 209
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 483 HDNLPYKIKRVK*YPHAERQHYR-YR*I--DNRSLSFNFQQKRVSVVRHSHYR*HKHYQ 650
H L ++ +V + H QHY Y+ + ++ LS +F + + S+ H H H H++
Sbjct: 314 HHKLEEQVPQVV-HEHVIEQHYEPYQIVHENHNVLSVDFGEDQHSITHHDHDHHHHHHE 371
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 483 HDNLPYKIKRVK*YPHAERQHYR-YR*I--DNRSLSFNFQQKRVSVVRHSHYR*HKHYQ 650
H L ++ +V + H QHY Y+ + ++ LS +F + + S+ H H H H++
Sbjct: 314 HHKLEEQVPQVV-HEHVIEQHYEPYQIVHENHNVLSVDFGEDQHSITHHDHDHHHHHHE 371
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 483 HDNLPYKIKRVK*YPHAERQHYR-YR*I--DNRSLSFNFQQKRVSVVRHSHYR*HKHYQ 650
H L ++ +V + H QHY Y+ + ++ LS +F + + S+ H H H H++
Sbjct: 314 HHKLEEQVPQVV-HEHVIEQHYEPYQIVHENHNVLSVDFGEDQHSITHHDHDHHHHHHE 371
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,155,097
Number of Sequences: 27780
Number of extensions: 397865
Number of successful extensions: 1202
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -