Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m24
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    73   3e-15
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.88 

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 72.5 bits (170), Expect = 3e-15
 Identities = 50/197 (25%), Positives = 98/197 (49%), Gaps = 8/197 (4%)
 Frame = +3

Query: 105 NKVVIITGASSGIGAETAYEFAKLNAKLVLTGRKKENLDNVASDCESRSPSKIKPLVVVA 284
           ++V ++TGA+SGIG            K++    + + +  +  + +S+ P K+ PL    
Sbjct: 7   DEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSK-PGKLVPLQ--C 63

Query: 285 DMNNESDVENIIKKTVDNYHQLDVLINNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLT 464
           D++N++D+  +I+    N   +D+LINNA +    T++   +  + +I + N+ G   + 
Sbjct: 64  DLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMI 123

Query: 465 MLAIPHLIK---TKGNIVNVSSVTGLRSFP---NVLAYCISKSAIDQFTRCVALEVAL-- 620
              +  + K     G IVN++  +GL   P   N  AY  SK A+   T C+  E+A   
Sbjct: 124 QEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCE 183

Query: 621 KGVRVNAVXPGVIATGL 671
             ++V ++ P ++ T +
Sbjct: 184 SNIKVISISPDLVETDM 200


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = +3

Query: 375 VLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNVSSVTGLRSFPNVL 554
           VL+SG +  T      ++   ++     L  + IPH + T G    VS         N +
Sbjct: 142 VLDSGLVNNTQPMCSPKLFAFDLNTSQLLKQVEIPHDVATTGKGELVSLTVQAMDSTNTM 201

Query: 555 AYCI 566
            Y +
Sbjct: 202 VYMV 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,884
Number of Sequences: 438
Number of extensions: 3827
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)