Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19m23
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 46 5e-06
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 40 3e-04
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 38 0.001
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 37 0.002
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 37 0.003
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 32 0.065
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 31 0.11
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 31 0.20
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 30 0.34
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 29 0.60
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.1
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 1.8
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 27 2.4
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 27 3.2
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.2
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.6
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.6
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.8
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 25 9.8
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 46.0 bits (104), Expect = 5e-06
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +2
Query: 335 IDEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFEC--NECQIVFNKKSNLDLH 508
I E H + +C C +F + L H+ + ++ T+ C C+ F + S L H
Sbjct: 198 IREAH-VPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKH 256
Query: 509 CQTHHQIKSKSKCDSCAITFKSRYCLRRHLK 601
H+ CDSC F ++ L+RHL+
Sbjct: 257 ISVIHEGNMAFHCDSCGTKFGYKHMLQRHLE 287
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Frame = +2
Query: 356 YTCQY--CRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQI 529
Y C Y C L+F +L H+ HE K ++ C V ++ Q H +
Sbjct: 144 YPCTYQDCELRFATKQKLQNHVNRAHE---KIISYSCPHESCVGHEGFEKWSQLQNHIRE 200
Query: 530 KSKSKCDSCAITFKSRYCLRRHLKLKQ-QLAENSCIHC 640
C C FK+ LR H+ L Q L E HC
Sbjct: 201 AHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHC 238
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 39.9 bits (89), Expect = 3e-04
Identities = 26/93 (27%), Positives = 44/93 (47%)
Frame = +2
Query: 323 KNEEIDEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLD 502
K+E + +Y+ T C +FT+ L HM ++ + F+C+ C+ F ++ +
Sbjct: 561 KSESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYR----PFQCSICKKSFARQHDKR 616
Query: 503 LHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLK 601
H Q H IK+ + C +C F L RH K
Sbjct: 617 RHEQLHTGIKAFA-CVTCNQRFARMDALNRHYK 648
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 467 CQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSCIHCQK 646
C F + NL H TH + +C C +F ++ RRH +L + +C+ C +
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRP-FQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQ 635
Query: 647 KFTSKD 664
+F D
Sbjct: 636 RFARMD 641
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +2
Query: 461 NECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSCIHC 640
N C +K N++ H QTH + +CD C F + L+RHL++ + C C
Sbjct: 448 NGCNKRIARKYNVESHIQTHLSDRPY-RCDLCKAGFVRHHDLKRHLRIHENGRPYVC-EC 505
Query: 641 QKKFTSKD 664
K+F D
Sbjct: 506 LKRFNRLD 513
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 356 YTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQ 514
Y C C+ F ++ L RH+ I + + C EC FN+ L+ H Q
Sbjct: 473 YRCDLCKAGFVRHHDLKRHL----RIHENGRPYVC-ECLKRFNRLDALNRHKQ 520
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +2
Query: 335 IDEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQ 514
ID K ++ C C +FT++ L RH + K C C+I +K L H Q
Sbjct: 25 IDSKR-VFPCDQCAKRFTRHENLTRHKACH----SKAEPIPCPYCEIKCKRKDLLKRHIQ 79
Query: 515 THHQIKS 535
H KS
Sbjct: 80 RFHNDKS 86
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +2
Query: 545 CDSCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKD 664
CD CA F L RH + C +C+ K KD
Sbjct: 33 CDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKD 72
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +2
Query: 446 ATFECNECQIVFNKKSNLDLHCQTHHQIKS 535
ATF C++C ++F K+S L H +T+HQ+++
Sbjct: 137 ATFRCDKCDMMFVKQSGLTNHKRTYHQVET 166
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 32.3 bits (70), Expect = 0.065
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = +2
Query: 362 CQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKS 541
C +C+ ++ H H++ F+ + IV++ D H Q + +
Sbjct: 117 CTFCKTEWDTVLITKDHEIDIHDVDLAKLPFQDEKLGIVYS-----DEHAQEESNLLLQF 171
Query: 542 KC--DSCAITFKSRYCLRRHLKLK-QQLAENSCIHCQKKFT 655
C D+C IT K + L+ H K+K + + C+ +K FT
Sbjct: 172 NCPEDACDITCKGWFDLKLHAKVKHHKFFCDLCVKNKKVFT 212
Score = 31.5 bits (68), Expect = 0.11
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +2
Query: 362 CQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKS 541
C++C F + +LF+H HE F +L+ H + H I +
Sbjct: 247 CEFCNTHFYDDDELFKHCREKHERCYICDQVAGRPTHQYFKNYDSLERHFEKDHYICRER 306
Query: 542 KC-DSCAITFKSRYCLRRH 595
+C + + F + L+ H
Sbjct: 307 ECLERKFVVFGTEIDLKAH 325
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 410 HMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCD--SCAITFKSRYC 583
H S+ + C EC F++ S+L +H +H + CD C F R
Sbjct: 454 HTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTG-ERPFVCDYAGCGKAFNVRSN 512
Query: 584 LRRHLKL 604
+RRH ++
Sbjct: 513 MRRHQRI 519
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 356 YTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKS 535
+ C C KF ++ L RH+ S H ++ F C C F+++ NL H + H
Sbjct: 423 FVCPECSKKFKRSEHLRRHIRSLHTSEK---PFVC-ICGKRFSRRDNLRQHERLHVNASP 478
Query: 536 KSKC 547
+ C
Sbjct: 479 RLAC 482
Score = 29.5 bits (63), Expect = 0.46
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 449 TFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKL 604
+F C EC F + +L H ++ H + C C F R LR+H +L
Sbjct: 422 SFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERL 472
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 356 YTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECN--ECQIVFNKKSNLDLHCQTH 520
Y C +C+ F + RH+ S H ++ FEC+ C+ F ++ L H +TH
Sbjct: 4 YECPFCKRVFHRQEHQVRHIRS-HTGEK---PFECSYPSCKKRFTRRDELIRHVRTH 56
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 29.1 bits (62), Expect = 0.60
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 356 YTCQY--CRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHH 523
+ C Y C FT+ L RH ++ ++ F C+ C F + L+ H Q H
Sbjct: 26 FYCTYPDCPKSFTRKEHLRRHERTHENVK----AFSCSFCNRAFARSDVLNRHVQQMH 79
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +2
Query: 323 KNEEIDEKHYIYTCQYCRLKFTQNSQLFRHMTSNH 427
++E E ++C +C F ++ L RH+ H
Sbjct: 45 RHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +2
Query: 542 KCD--SCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKD 664
KCD C +F + RRH + C HC FT D
Sbjct: 18 KCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSD 60
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 356 YTCQYCRLKFTQNSQLFRHMTSNHEIQQKTA 448
+ C +C FT++ L RH+ H ++Q A
Sbjct: 47 FICPHCSSSFTRSDVLNRHVNQKH-VKQNDA 76
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +2
Query: 443 TATFECNECQIVFNKKSNLDLHCQT---HHQIKSK--SKCDSCAITFKSR-YCLRRHLKL 604
+ +F C C + FN + +H ++ H+ +K K S A F + +++ +
Sbjct: 2 STSFACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASLPPLSAEVFAGKILSIQKQNEE 61
Query: 605 KQQLAE--NSCIHCQKKFTSK 661
Q+ AE +C C KKF S+
Sbjct: 62 VQKKAEFYQNCEVCNKKFYSE 82
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 661 FARELLLTMYARVLRKLLLEFQMSSQTVSRLKC 563
F R L+L V+ KL L+F M V++++C
Sbjct: 98 FERSLILLHKMPVIWKLYLQFLMKQPNVTKIRC 130
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/16 (50%), Positives = 15/16 (93%)
Frame = +3
Query: 45 KFHQFHDRKQTFKIVN 92
KFH+F ++K++F+I+N
Sbjct: 39 KFHEFDEQKKSFEIIN 54
>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 377 LKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSN 496
L+F + + +N + + FECN C + KSN
Sbjct: 5 LRFFKQGAILHENNTNFTERSSSVFFECNPCYSIEKLKSN 44
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 341 EKHYIYTCQYCRLKFTQNSQLFRHMTSNHE 430
EK +I + C FT++ L +HM + HE
Sbjct: 103 EKPFICSVPECDRSFTRSDALAKHMRTVHE 132
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 401 LFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTH 520
L + + NH IQ+ F +CQ +F+ L TH
Sbjct: 460 LTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTH 499
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 322 SRSWTSYAYSGTSTWFLIHYEEFIYIC 242
SR WTS A + H+EEF+ +C
Sbjct: 22 SRLWTSEALVRYPEIVVKHHEEFLKVC 48
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 383 FTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDL 505
+ Q + F H+ + EIQQ+ A + VF KS+L+L
Sbjct: 142 YDQARKEFYHLRAEQEIQQRVAHDQAQALGAVFT-KSDLEL 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,840
Number of Sequences: 5004
Number of extensions: 51027
Number of successful extensions: 152
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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