Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19m23
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 40 0.002
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 39 0.003
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 36 0.029
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 32 0.36
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 32 0.36
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009 30 1.9
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 29 2.5
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307... 29 4.4
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 29 4.4
02_02_0586 - 11861509-11861637,11863651-11863815,11864738-118648... 29 4.4
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010 29 4.4
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626... 28 5.8
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 28 7.7
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115... 28 7.7
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 28 7.7
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 28 7.7
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +2
Query: 356 YTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKS 535
+TCQ C F + + L +HM S+ + + E +C + +K +L+ H H
Sbjct: 60 HTCQECGASFQKPAHLKQHMQSHSDERSFICPLE--DCPFSYIRKDHLNRHMLKHQGKLF 117
Query: 536 KSKCDSCAITFKSRYCLRRHLK 601
D C F + ++RH+K
Sbjct: 118 TCSMDGCGRKFSIKANMQRHVK 139
Score = 36.7 bits (81), Expect = 0.017
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Frame = +2
Query: 356 YTCQYCRLKFTQNSQLFRHMTSNH-EIQQKTATFE-------------CNECQIVFNKKS 493
Y C++C + ++ + HM ++H E K+ ++ C EC F K +
Sbjct: 14 YKCEFCTVVRSKKCLIRAHMVAHHKEELDKSEIYKSNGEKVVHEGDHTCQECGASFQKPA 73
Query: 494 NLDLHCQTHHQIKS-KSKCDSCAITFKSRYCLRRH-LKLKQQLAENSCIHCQKKFTSK 661
+L H Q+H +S + C ++ + L RH LK + +L S C +KF+ K
Sbjct: 74 HLKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHMLKHQGKLFTCSMDGCGRKFSIK 131
Score = 34.7 bits (76), Expect = 0.067
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Frame = +2
Query: 338 DEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQT 517
DE+ +I + C + + L RHM + Q K T + C F+ K+N+ H +
Sbjct: 84 DERSFICPLEDCPFSYIRKDHLNRHMLKH---QGKLFTCSMDGCGRKFSIKANMQRHVKE 140
Query: 518 HHQIKSKSK------C--DSCAITFKSRYCLRRHLK--LKQQLAENSCIH--CQKKFTS 658
H+ ++ +K C + C FK +++H + +K E C C K FT+
Sbjct: 141 IHEDETATKSNRQFVCKEEGCNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKTFTN 199
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 347 HYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECN--ECQIVFNKKSNLDLHCQTH 520
H C C K Q + F+ HE T C+ +C++ F+KKSNLD H +
Sbjct: 410 HRHVVCDVCGTK--QLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHVKAV 467
Query: 521 HQIKSKSKC--DSCAITFKSRYCLRRHLK 601
H+ K C C +F ++ H K
Sbjct: 468 HEQKRPFVCGFSGCGKSFSYKHVRDNHEK 496
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 353 IYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLH 508
+Y+C+ C +K T L H+T ++Q+ C C++ N + L H
Sbjct: 268 LYSCKVCSVKCTFERMLAYHLTGKKHLKQENLQLSCEICKLQCNSEKVLSDH 319
>12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 32.3 bits (70), Expect = 0.36
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 371 CRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQT-HHQIKSKSKC 547
CRL + +FR H+I + C C+ F + LD H H+ + S
Sbjct: 936 CRLH--PGNDMFREQ-EQHKIHFDINEWRCGFCKKAFRAEKFLDQHFHNRHNNLVDNSLA 992
Query: 548 DSCAITFKSRYCLRRHLKLKQQLAE-NSCIHCQKKF 652
DSC + + R H L +Q + ++C + K F
Sbjct: 993 DSCFPINQGQSASRLHEFLLRQFCDAHTCKNGSKPF 1028
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +2
Query: 458 CNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSCIH 637
C C F+ +S+L HC + H+ + F C++ ++ ++AEN C
Sbjct: 57 CLFCSARFDSESSLFSHCASEHRFDFYRVVKETGMDFYG--CIKLINFVRSKVAENKCWS 114
Query: 638 CQKKFTS 658
C + F+S
Sbjct: 115 CGQVFSS 121
>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
Length = 431
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 452 FECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDS 553
F C +C VF K +L+LH T H + D+
Sbjct: 194 FSCPDCDEVFVKPDSLELHRSTRHAVSELGADDT 227
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 449 TFECNECQIVFNKKSNLDLHCQTHHQIKSKSK 544
++EC +C + F+ +S H T H++ SK +
Sbjct: 311 SYECQQCNLTFHGQSAYAHHLITFHKVSSKRR 342
>11_06_0176 +
20929629-20929791,20929918-20930333,20930449-20930736,
20931034-20931147,20931245-20931352,20931701-20931744,
20933106-20933200,20934103-20934182,20934278-20934391,
20934476-20934628,20934740-20934832
Length = 555
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +2
Query: 332 EIDEKHYIYTCQYCRLKFTQNSQL---FRHMTSNHEIQQKTATFECNECQIVFNKKSNLD 502
E++ H Y + ++ Q + F ++ K A +CN C F K S+L+
Sbjct: 486 EVEHSHQSYRREQAKIPKDQELCVICFFERYSTIAMASGKNAGTKCNLCNARFLKDSDLE 545
Query: 503 LHCQTHHQ 526
H + +HQ
Sbjct: 546 FHRRYYHQ 553
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = +2
Query: 356 YTCQYCRLKFTQNSQLFRHMTSNHEIQ--QKTATFECNECQIVFNKKSNLDLHCQTHH 523
Y+C C FT L RH+ H Q Q + C C F L H + H
Sbjct: 497 YSCAVCMDSFTNRRVLERHVQEKHGAQYLQYSTLLRCISCNSNFLNTDLLWQHIVSDH 554
>02_02_0586 -
11861509-11861637,11863651-11863815,11864738-11864846,
11864971-11865065,11865169-11865702,11866299-11866499,
11867826-11868090,11868111-11868736
Length = 707
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 361 LPVLSFEIHAEFAALPSHDIKSRNTTENGHLRM*RVPDSLQQEEQSGPTLSNSPPNKK 534
LPV+ ++ E AA SHD + E H R P + +Q + L++SP NK+
Sbjct: 556 LPVV-YKEEDEVAA--SHDGRKPKLRERSHKRRDNKPKAEEQHKDKEQNLNSSPSNKE 610
>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
Length = 613
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 362 CQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQ 472
C++C+ F +++L+ HMT H F C+ CQ
Sbjct: 147 CEFCKSPFYGDNELYTHMTREH--------FSCHICQ 175
>01_06_0933 -
33161687-33162205,33162290-33162376,33162459-33162695,
33162778-33162886,33162997-33163313,33163398-33163607,
33165380-33165901
Length = 666
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 398 QLFRHMTSNHEIQQKTATFECNECQIV 478
Q FRH HE Q+ AT +EC+IV
Sbjct: 417 QSFRHRVRQHERQRWAATRGVDECRIV 443
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 335 IDEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQ 439
+D++ Y C+ C LK T L H++ I+Q
Sbjct: 355 MDKQKATYFCEVCSLKCTSQRMLADHLSGKKHIKQ 389
>08_02_1060 +
24007980-24008662,24010078-24010219,24010293-24011537,
24012453-24013040
Length = 885
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 449 TFECNECQIVFNKKSNLDLHCQTHHQIKSKSK 544
++EC +C + F+ +S H T H++ SK +
Sbjct: 317 SYECQQCNLTFHGQSAYAHHLITFHKMGSKRR 348
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 27.9 bits (59), Expect = 7.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 362 CQYCRLKFTQNSQLFRHMTSNH 427
C++CR F +++L+ HM+ H
Sbjct: 166 CEFCRSSFYGDNELYTHMSREH 187
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 323 KNEEIDEKHYIYTCQY--CRLKFTQNSQLFRHMTSNHE 430
K +D H C+Y C +FTQ S+L H+ HE
Sbjct: 126 KTHSVDNYH---VCKYPECARRFTQESKLRAHIKQQHE 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,378,190
Number of Sequences: 37544
Number of extensions: 278574
Number of successful extensions: 704
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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