Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19m23
(665 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 48 7e-06
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 35 0.056
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 34 0.074
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 34 0.074
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 33 0.17
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 32 0.30
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 30 1.6
At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein ... 29 2.1
At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1... 29 2.8
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 29 2.8
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 29 3.7
At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40... 29 3.7
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil... 29 3.7
At3g03110.1 68416.m00307 exportin 1, putative strong similarity ... 28 4.9
At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protei... 28 4.9
At5g42090.1 68418.m05124 expressed protein 28 6.4
At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2... 28 6.4
At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein ... 28 6.4
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 28 6.4
At4g28820.1 68417.m04120 zinc finger (HIT type) family protein c... 27 8.5
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 27 8.5
At2g41770.1 68415.m05163 expressed protein contains Pfam domain ... 27 8.5
At1g60250.1 68414.m06785 zinc finger (B-box type) family protein... 27 8.5
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 47.6 bits (108), Expect = 7e-06
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Frame = +2
Query: 356 YTCQYCRLKFTQNSQLFRHMTSNHEI--------------QQKTATFECNECQIVFNKKS 493
Y CQYC + ++N + +H+ S+H++ ++ ++ C EC F K +
Sbjct: 20 YLCQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVDEESSSNHTCQECGAEFKKPA 79
Query: 494 NLDLHCQTHHQIKS-KSKCDSCAITFKSRYCLRRHLKL-KQQLAENSCIHCQKKFT 655
+L H Q+H +S D CA +++ + L RHL K +L + +C+ +F+
Sbjct: 80 HLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFS 135
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +2
Query: 332 EIDEKHYI-YTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLH 508
E+DE+ +TCQ C +F + + L +HM S H ++ ++ T ++C + +K +L+ H
Sbjct: 57 EVDEESSSNHTCQECGAEFKKPAHLKQHMQS-HSLE-RSFTCYVDDCAASYRRKDHLNRH 114
Query: 509 CQTHHQIKSKSKCDSCAITFKSRYCLRRHLK 601
TH K ++C F + + RH+K
Sbjct: 115 LLTHKGKLFKCPKENCKSEFSVQGNVGRHVK 145
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Frame = +2
Query: 347 HYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNE--CQIVFNKKSNLDLHCQTH 520
H C+ C K + + + RH+ + H+ +C C F+K SNL H +
Sbjct: 272 HQHINCEICGSKHLKKN-IKRHLRT-HDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAV 329
Query: 521 HQIKSKSKC--DSCAITFKSRYCLRRH 595
H C C + F ++ +H
Sbjct: 330 HDDIRPFVCGFPGCGMRFAYKHVRNKH 356
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/91 (23%), Positives = 36/91 (39%)
Frame = +2
Query: 371 CRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCD 550
C F SQL +H S+ ++ A C F + L H ++ HQ C+
Sbjct: 222 CGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQ---HINCE 278
Query: 551 SCAITFKSRYCLRRHLKLKQQLAENSCIHCQ 643
C + ++RHL+ + + I C+
Sbjct: 279 ICGSKHLKKN-IKRHLRTHDEDSSPGEIKCE 308
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 34.7 bits (76), Expect = 0.056
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 341 EKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFE-CNEC-QIVFNKKSNLDLHCQ 514
E+ Y+ + C KF +S+L RH + + T+E C + + FN +S++ H Q
Sbjct: 105 ERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQ 164
Query: 515 THHQIKSKSKCDSCAITFKSRYCLRRHL 598
++ I S C + Y L+ H+
Sbjct: 165 ENYHICPYS---GCVKRYAHEYKLKNHV 189
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 458 CNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSC 631
C C +FN++ +L H + + + +C C KS +R HL + L++ +C
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGNC 76
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 458 CNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSC 631
C C +FN++ +L H + + + +C C KS +R HL + L++ +C
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGNC 76
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 338 DEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTAT 451
DE +Y C++C LKF ++ L HM + H +++T T
Sbjct: 45 DESGKVYECRFCSLKFCKSQALGGHM-NRHRQERETET 81
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 362 CQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKS 541
C++CR F +++L+ HM++ H + + + + +L++H + H +
Sbjct: 200 CEFCRNPFYGDNELYTHMSTEHYTCHLCQRSQPGQYE-YYKNYDDLEIHFRRDHFLCEDD 258
Query: 542 KCDSCAIT-FKSRYCLRRH 595
C + T F++ L+RH
Sbjct: 259 SCLAKKFTVFQNESELKRH 277
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Frame = +2
Query: 347 HYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNE--CQIVFNKKSNLDLHCQTH 520
H C+ C K + + + RH+ + H+ +C C F+K SNL H +
Sbjct: 184 HQHINCEICGSKHLKKN-IKRHLRT-HDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAV 241
Query: 521 HQIKSKSKC--DSCAITFKSRYCLRRH 595
H C C + F ++ +H
Sbjct: 242 HDDIRPFVCGFPGCGMRFAYKHVRNKH 268
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/91 (23%), Positives = 36/91 (39%)
Frame = +2
Query: 371 CRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCD 550
C F SQL +H S+ ++ A C F + L H ++ HQ C+
Sbjct: 134 CGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQ---HINCE 190
Query: 551 SCAITFKSRYCLRRHLKLKQQLAENSCIHCQ 643
C + ++RHL+ + + I C+
Sbjct: 191 ICGSKHLKKN-IKRHLRTHDEDSSPGEIKCE 220
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +2
Query: 437 QKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLK 601
+++ T ++C + +K +L+ H TH K ++C F + + RH+K
Sbjct: 3 ERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNVGRHVK 57
>At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 373
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +2
Query: 410 HMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQ----IKSKSKCDSCAITFKS 574
H + EI F CN C +F K + L+ H H I +S + I FKS
Sbjct: 112 HQQTEFEISSSDEIFPCNSCGEIFPKINLLENHIAIKHAVSELIAGESSTNIVKIIFKS 170
>At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1)
identical to Cys2/His2-type zinc finger protein 1
[Arabidopsis thaliana] gi|6009887|dbj|BAA85108
Length = 245
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = +2
Query: 347 HYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSN-----LDLHC 511
H Y C C F+ L H TS H T+ N+ ++ N SN +++
Sbjct: 94 HRDYKCTVCGKSFSSYQALGGHKTS-HRKPTNTSITSGNQ-ELSNNSHSNSGSVVINVTV 151
Query: 512 QTHHQIKSKSKCDSCAITFKS 574
T + + K +C+I FKS
Sbjct: 152 NTGNGVSQSGKIHTCSICFKS 172
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 371 CRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHH 523
CRL ++ L+R +H++ ++C C+ FN + LD H T H
Sbjct: 81 CRLH--PDNDLYRDQ-EHHKVHVDVFEWKCGYCKKSFNDEKFLDKHFSTRH 128
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 443 TATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHL 598
T +C C FNKK +L H + + + C C +S LR HL
Sbjct: 3 TCRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHL 54
>At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40
repeats (PF00400); low similarity to MEK kinase alpha
(GI:4028547); transcriptional repressor TUP1
(GI:3406654) [Dictyostelium discoideum]; Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (TGF-beta receptor interacting protein 1)
(TRIP-1) (SP:Q38884) [Arabidopsis thaliana]
Length = 442
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 119 SITRDNCVFVYDFECLFSVMKL 54
S+TR C+ V+DFE L+ KL
Sbjct: 53 SVTRSGCLMVHDFESLYCQSKL 74
>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
protein contains Pfam domain, PF00096: Zinc finger, C2H2
type; contains Pfam domain, PF01428: AN1-like Zinc
finger
Length = 279
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +2
Query: 353 IYTCQYCRLKFTQNSQLFRHMTSNHEIQQK----TATFE-CNECQIVFNKKSNLDLHCQT 517
+ C C KF+ + L H+ HE +K T + C C F +L H +
Sbjct: 212 VEVCPQCGAKFSSVTSLVEHVEKTHERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIER 271
Query: 518 HHQIKSKS 541
H+ SK+
Sbjct: 272 DHRGTSKA 279
>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
Exportin1 (XPO1) protein [Arabidopsis thaliana]
GI:7671510; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1076
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 577 ILSAKTSETQAAACGELLHTLSEEVHE 657
+++AKTSET C +L LSEEV +
Sbjct: 145 VIAAKTSETICENCMAILKLLSEEVFD 171
>At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 466
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 356 YTCQYCR-LKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIK 532
+ CQ C L F++N++ R Q +EC C + +++++ L C Q
Sbjct: 283 WICQTCNFLNFSKNTRCLRCKDKPTLRQINPGEWECESCNYINFRRNSICLKCDHKRQKA 342
Query: 533 SKSKCDS 553
+ DS
Sbjct: 343 ANVTPDS 349
>At5g42090.1 68418.m05124 expressed protein
Length = 439
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 373 TILAGINIMFFVDFFVLSRSWTSYAYSGTSTWFLIHY 263
T+L + +F V +F L+ +W Y T F IH+
Sbjct: 171 TVLPKVYFLFSVIYFSLAATWIYVLYKKRLTVFAIHF 207
>At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2)
identical to Cys2/His2-type zinc finger protein 2
[Arabidopsis thaliana] gi|6009885|dbj|BAA85107
Length = 273
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +2
Query: 323 KNEEIDEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEI---QQKTATFECNECQIVFNKKS 493
+N+++ E+ Y+ C K Q SQ H S + K ++CN C+ F
Sbjct: 61 QNQDLTEEEYLALCLLMLAK-DQPSQTRFHQQSQSLTPPPESKNLPYKCNVCEKAFPSYQ 119
Query: 494 NLDLHCQTHHQIK 532
L H + H+IK
Sbjct: 120 ALGGH-KASHRIK 131
>At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 270
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 416 TSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIK 532
T + E++++ FEC+ C+ VF L H TH +K
Sbjct: 139 TRSSEVEER---FECDGCKKVFGSHQALGGHRATHKDVK 174
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 482 NKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHL 598
+KKS + + + S ++CD C F+SR L +HL
Sbjct: 581 SKKSTRGMKTKGTTKKNSSNECDRCGEEFESRTKLHKHL 619
>At4g28820.1 68417.m04120 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 173
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 509 CQTHHQIKSKSKCDSCAITFKSRYCLRRH 595
C+ ++ SK KC SC + + S C + H
Sbjct: 9 CEICEKVVSKYKCPSCLVPYCSLGCFKIH 37
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/62 (17%), Positives = 29/62 (46%)
Frame = +2
Query: 362 CQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKS 541
C++C+ F +++L+ HM+ H + + + + +L++H ++ H +
Sbjct: 200 CEFCKRPFYGDNELYTHMSREHYTCHICQRLKPGQYE-YYGNYDDLEVHFRSDHFLCEDE 258
Query: 542 KC 547
C
Sbjct: 259 TC 260
>At2g41770.1 68415.m05163 expressed protein contains Pfam domain
PF03385: Protein of unknown function, DUF288
Length = 771
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 325 LSRSWTSYAYSGTSTWFLIHYEEFIYICLSVR*LHFVI 212
+S+SWTS +G S WF + E + +S HF +
Sbjct: 614 VSKSWTSVKPTGNSDWFSVQ-AELVKKTVSTMPAHFQV 650
>At1g60250.1 68414.m06785 zinc finger (B-box type) family protein
contains similarity to zinc finger protein GI:3618320
from [Oryza sativa]
Length = 251
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 467 CQIVFNKKSNLDLHCQTHHQIKSKSKCDSC 556
C++ SN ++C TH+QI CDSC
Sbjct: 147 CELCVASNSNAVVYCPTHNQI----LCDSC 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,026,591
Number of Sequences: 28952
Number of extensions: 243547
Number of successful extensions: 774
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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