Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m20
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         154   6e-38
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   3.7  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  154 bits (374), Expect = 6e-38
 Identities = 72/105 (68%), Positives = 87/105 (82%)
 Frame = +3

Query: 390 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 569
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 570 SELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLXKAPF 704
           ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVL K  F
Sbjct: 62  NDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKF 106


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 283 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 104
           LRK L    S  +  RE  + L FNP E+ +V            L + ++  +   +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 222  VFEVSLADLQADTDAERSFRKFRLIAEYVQ 311
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -1

Query: 409  MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 245
            ++ SM +C ++ + +SL   R +   +  +L PC Y  ++++L + +    S+S CR
Sbjct: 948  VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 87  IVDPFTRKDWYDVKAPSMFSKRQ 155
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 176 VDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDR 30
           VD +       + +++ D+ PIF  + V  LLL T FT L+   +  DR
Sbjct: 159 VDNQFVPFQTLQTKKAFDVEPIFNGKDVFLLLLWTLFTYLQVISVLNDR 207


>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 696 PXSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 586
           P   L P GC  R  G      S  P + +Q STC P
Sbjct: 453 PKQGLQPGGCDSRISGGRRKGSSSAPPRGAQRSTCRP 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,921,439
Number of Sequences: 59808
Number of extensions: 497809
Number of successful extensions: 1445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)