Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19m17
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 41 1e-04
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 29 0.84
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 2.6
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 2.6
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 27 3.4
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 4.5
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 26 5.9
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 25 7.9
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 7.9
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 41.1 bits (92), Expect = 1e-04
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Frame = +1
Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 438
R R KLL+++++F++ +DLC PG ++ L K ++ +
Sbjct: 22 RARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS--RELLKNIDTSIAADE---- 75
Query: 439 KPTVCK--RKNFTTITGP-DKSGDVFDKNVVFEISIKCGNA-CDLVLADGSVDVNGRENE 606
KP + + I G D+ N + I GN DLV++DG+ DV G +
Sbjct: 76 KPMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADLVVSDGAPDVTGLHDL 135
Query: 607 QERLNFDLIMCETQLILICLRPGGNCV 687
E + +++ L + L+PGG V
Sbjct: 136 DEYIQAQILLAAFNLAVCVLKPGGKFV 162
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 629 KSKLRRSCSFSRPLTSTEPSANTKSHALPHLMLI 528
K+ L R+C SRP+ S + N S LP + I
Sbjct: 83 KAALGRACGVSRPVISASITTNEASDLLPQIQAI 116
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 253 TRRPRCWRKLLEIDKKFHVCRHVDTFLD 336
TR RC +L E +K+ +H+ +F+D
Sbjct: 442 TREERCKNQLREYEKQMEYRKHLQSFID 469
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 537 DANLEYNIFIKHVTRFVGPRNGCEIFAFAHC-RFVHAH 427
D+N+ Y + R G R G +FA A C F H H
Sbjct: 80 DSNMYYVLNTIRAKRVEGTRRGGSVFAMAICTTFPHVH 117
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPG 354
R R KL+++++K+ +DLC PG
Sbjct: 26 RSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPG 57
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 392 QSGFNDMV*LANSPGPPHRSKNVST 318
Q G + M+ ++NSPG PH + V T
Sbjct: 347 QEGKSHMILISNSPGEPHGAIGVIT 371
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 275 RQHLGLRVGRLSNNFERAQ 219
R+H+G VGR ++ ERAQ
Sbjct: 924 REHIGFYVGRTYHDLERAQ 942
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +3
Query: 273 AKTIRNRQKVSCLPTR*HVFGSVRRTGRVCQLYHVI-----EPALQSVRRHVDKQLGVRV 437
A + RNRQ++S P SV TG QLY ++ P L ++R + +
Sbjct: 282 AASFRNRQQISHPPLGRTSSSSVLPTGPASQLYDMLSGRSERPELGNIREEDINTVQTIM 341
Query: 438 QTDSVQ 455
QT Q
Sbjct: 342 QTSRAQ 347
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 544 GNACDLVLADGSVDVNGRENEQERLNF 624
G+ L DG++ VNG++++Q + NF
Sbjct: 969 GDHLPLFTKDGTIYVNGKKSKQFQFNF 995
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,860
Number of Sequences: 5004
Number of extensions: 55262
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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