Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m17
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667...    42   4e-04
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260...    34   0.093
09_04_0730 + 19783346-19783372,19783548-19783638,19783973-197840...    29   3.5  
03_05_0370 + 23541188-23542537                                         29   3.5  
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309...    29   3.5  
03_02_0094 - 5583932-5584036,5584137-5584200,5584305-5584387,558...    28   8.1  

>06_03_1314 +
           29266320-29266346,29266463-29266556,29266663-29266712,
           29266798-29266847,29266945-29267053,29267135-29267195,
           29267291-29267343,29267629-29267721,29268091-29268166,
           29268401-29268508,29268596-29268840
          Length = 321

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 438
           R R   KLL+ID++F++   V   +DLC  PG ++   +S N    A             
Sbjct: 22  RARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQ-VLSRNLYVPAKQSPDCKEGDLPL 80

Query: 439 KPTVCKRKNFTTITGP-DKSGDVFDKNVVFEISIKCGNAC--DLVLADGSVDVNGRENEQ 609
              +   +    I G     GD+ +     E+ I+  + C  DLV+ DG+ DV G  +  
Sbjct: 81  IVAI-DLQPMAPIEGVIQVQGDITNARTA-EVVIRHFDGCKADLVVCDGAPDVTGLHDMD 138

Query: 610 ERLNFDLIMCETQLILICLRPGGNCV 687
           E +   LI+    ++   L+ GG  V
Sbjct: 139 EFVQSQLILAALTIVTHVLKVGGKFV 164


>05_07_0148 +
           28024820-28025293,28025655-28025702,28026034-28026080,
           28026334-28026496,28026595-28026656,28026820-28027003,
           28027093-28027182,28027553-28027686,28027747-28027936,
           28028103-28029033,28029860-28030065
          Length = 842

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 35/140 (25%), Positives = 57/140 (40%)
 Frame = +1

Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 438
           R R   KLL++D +F         LDLC  PG +    ++  P+  A+ V +    +   
Sbjct: 23  RSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPV-GAFVVGVDLVPIRPI 81

Query: 439 KPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 618
           +      ++ TT         + D N V         A D+VL DGS +V G   ++   
Sbjct: 82  RGAHSLTEDITTTKCRAAVRRLMDSNGV--------AAFDVVLHDGSPNVGGAWAQEATA 133

Query: 619 NFDLIMCETQLILICLRPGG 678
              L++   +L  + L P G
Sbjct: 134 QSSLVIDAVRLATMFLAPKG 153


>09_04_0730 +
           19783346-19783372,19783548-19783638,19783973-19784051,
           19784410-19784743,19784934-19785968,19786141-19786290,
           19786781-19787215
          Length = 716

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 433 VYKPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGR-ENEQ 609
           V  P V  ++     + PDK+ D+FD   + ++S + G +    L D   D+  + E+E 
Sbjct: 106 VEAPYVAPKQKIAIKSSPDKTVDIFDGMTLLDLSKRTGASIG-ALQDILTDLGEKVESEF 164

Query: 610 ERLNFDL 630
           + ++ DL
Sbjct: 165 DAISIDL 171


>03_05_0370 + 23541188-23542537
          Length = 449

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 199 FSSKSVVCARSKLFDKRPTRRPRCWRKLLEIDKKFHV--CRHVDTFLDLCGGPGEFANYT 372
           +++  +  A S+LFD+ PTR    W  LL     FH   C  V  F D+       A +T
Sbjct: 45  YANAGLPAAASRLFDEMPTRDAVAWNALLAC-LVFHARPCAAVAAFRDMA-----TAGFT 98

Query: 373 MSLNPLC 393
            +   LC
Sbjct: 99  PTATTLC 105


>03_04_0151 -
           17729023-17729372,17729441-17730623,17730723-17730953,
           17730975-17731036,17732085-17732157,17737044-17737834,
           17737932-17738004
          Length = 920

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +1

Query: 511 KNVVFEISIKCGNACDLVLADGSVDVNGRENEQE---RLNFDLIMCETQLILICL 666
           K+ V +++I+C    D+V+  G V  N  E E+E   R+ F+    E+ ++++ L
Sbjct: 335 KSAVVKVNIECQVRGDVVIECGHVGENTDEEEEEAMFRIMFNTCFLESNMMVLTL 389


>03_02_0094 -
           5583932-5584036,5584137-5584200,5584305-5584387,
           5584523-5584588,5584711-5584801,5585259-5585392,
           5586219-5586413,5586886-5587015,5587873-5587958
          Length = 317

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 253 TRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGP 351
           T   RC  K+L+  KK  + R +    +LCGGP
Sbjct: 55  TNDERCIIKILKPVKKKKIKREIKILQNLCGGP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,883,778
Number of Sequences: 37544
Number of extensions: 358621
Number of successful extensions: 931
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)