Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19m17
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) 43 3e-04
SB_52274| Best HMM Match : FtsJ (HMM E-Value=0) 38 0.006
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0) 33 0.22
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68) 29 3.6
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 29 3.6
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 29 3.6
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 29 3.6
SB_25259| Best HMM Match : PhdYeFM (HMM E-Value=6.6) 29 4.7
SB_48008| Best HMM Match : M (HMM E-Value=0.0068) 29 4.7
SB_38820| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_27733| Best HMM Match : Filamin (HMM E-Value=0.22) 28 6.2
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_23998| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 8.3
>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
Length = 941
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = +1
Query: 481 GPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERLNFDLIMCETQLILI 660
G D +GD+ + ++ C LV ADGS+D + EQE LI CE L
Sbjct: 208 GADGTGDLMQLENLNHLAEACQGKVHLVTADGSIDCSDEPEEQENAVSQLIFCEAVTALT 267
Query: 661 CLRPGG 678
L GG
Sbjct: 268 VLATGG 273
>SB_52274| Best HMM Match : FtsJ (HMM E-Value=0)
Length = 316
Score = 38.3 bits (85), Expect = 0.006
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 1/144 (0%)
Frame = +1
Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 438
R R KLL++++ F + V +DLC PG ++ K V V
Sbjct: 22 RARSAFKLLQLNEDFDLFSGVSKVVDLCAAPGSWSQVLSRKLIEEKQDEEGEKPKIVAVD 81
Query: 439 KPTVCKRKNFTTITGPDKSGDVFDKNVVFEI-SIKCGNACDLVLADGSVDVNGRENEQER 615
+ I GD+ + +I S G DLV+ DG+ DV G + E
Sbjct: 82 LQAMAPLPGVIQI-----QGDITKTSTANQIISHFEGEHADLVICDGAPDVTGLHDIDEY 136
Query: 616 LNFDLIMCETQLILICLRPGGNCV 687
+ L++ + L+PGGN V
Sbjct: 137 IQGQLLLAALNITTHVLKPGGNFV 160
>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 541
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 379 LNPLCKAYGVTLTNNSVCVYKPTVCKRKNFTTITG 483
L+ LC AY + + + + CV P +CK N T I G
Sbjct: 256 LSILCSAYTLCILDKNECVETPGICKTGNCTNIEG 290
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 553 CDLVLADGSVDVNGRENEQERLNFDLIMCETQLILICLRPGGN 681
C +L V G+EN QE L+ L +C+ + ++ LR GG+
Sbjct: 271 CFFMLVMQGFSVEGQENIQEILSKQLYLCQFLMAILILRTGGH 313
>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
Length = 794
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 45 TNVNIAYVFLFFICIVLLNVLVV---FSDTNRTTDTKRKNVATKI 170
TNV++ Y F F CI + N+ + D + T T KN T I
Sbjct: 422 TNVHVLYAFASFWCIAMCNMYITGYSMIDYHDTMSTHLKNKETPI 466
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 214 VVCARSKLFDKRPTRRPRCWRK 279
+V R+ L+D RPT R RCW K
Sbjct: 599 LVDGRAHLYDARPTLRWRCWFK 620
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 553 CDLVLADGSVDVNGRENEQERLNFDLIMCETQLILICLRPGGN 681
C+L AD + DV RE E R D +Q++L C R GN
Sbjct: 672 CNLREADKASDVTDREAEANRAGEDPTFVRSQVLLTC-RAEGN 713
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 689 KTQLPPGR-KQIKISCVSHMIKSKLRRSCSFSRPLTSTEPSANTKSHALPHLMLISNTTF 513
K P G+ K + + SH K+K +R +RP T+PS TK+ L + T
Sbjct: 9 KRPRPSGKTKTSRKTKTSHKTKTKPKRPRQAARPSCKTKPSRKTKTSRKTKTSLKTKTKG 68
Query: 512 LSNTS 498
+ TS
Sbjct: 69 KTRTS 73
>SB_25259| Best HMM Match : PhdYeFM (HMM E-Value=6.6)
Length = 393
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = -3
Query: 489 VGPRNGCEIFAFAH---CRFVHAHRVVC 415
V PRNGC +F F + +H H V+C
Sbjct: 51 VFPRNGCNVFVFNNHLSKEEIHCHAVIC 78
>SB_48008| Best HMM Match : M (HMM E-Value=0.0068)
Length = 1068
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -1
Query: 644 VSHMIKSKLRRSCSFSRPLTSTEPSANT 561
VS+MIK LRR S + PL E ANT
Sbjct: 951 VSYMIKQDLRRQYSGALPLMKQEKFANT 978
>SB_38820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 196 TFSSKSVVCARSKLFDKRPTRRP 264
TF K VC+RS LFD P+ P
Sbjct: 34 TFFEKEEVCSRSNLFDSYPSPLP 56
>SB_27733| Best HMM Match : Filamin (HMM E-Value=0.22)
Length = 278
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 579 RAIGQHQIARVATLDANLEYNIFIKHVTR 493
++IG H RV L+A+LE + +KH R
Sbjct: 162 KSIGSHVALRVQLLEASLELELGVKHKLR 190
>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2371
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 346 GPGEFANYTMSLNPL--CKAYGVTLTNNSVCVYKPTVCKRKNFTT 474
G G AN+T NP C V L ++ T +KNFTT
Sbjct: 1775 GEGNLANFTFKTNPTIPCHRKSVGLETKAIPDSFITASSQKNFTT 1819
>SB_23998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 499 DVFDKNVVFE-ISIKCGNACDLVLADGSVDVNGRENEQERLNFDLIMCETQLILICLRPG 675
D +DK V + I + D +L D V+V R+N+ + +DLI +T + L G
Sbjct: 555 DEYDKTVECDGIEWRIRGRIDGMLDDKVVEVKNRKNKFMQPEYDLIQLQTYMFLFDTEEG 614
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 482 PVMVVKFLRLHTVGLYTHTEL 420
P MV +F+R+H V Y H L
Sbjct: 4003 PAMVARFIRIHPVAWYRHISL 4023
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,590,670
Number of Sequences: 59808
Number of extensions: 474151
Number of successful extensions: 1456
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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