Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19m17
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical... 62 5e-10
AF078792-3|AAC26945.2| 635|Caenorhabditis elegans Hypothetical ... 45 4e-05
Z36238-6|CAA85279.2| 337|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AF078792-4|AAN84813.1| 261|Caenorhabditis elegans Hypothetical ... 34 0.11
Z80344-3|CAB02488.2| 491|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z93382-7|CAB07618.1| 214|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z50071-7|CAA90405.3| 356|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z50071-6|CAL64000.2| 372|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z50071-5|CAH04718.2| 396|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 29 4.2
AC006832-4|AAF39996.1| 485|Caenorhabditis elegans Hypothetical ... 28 7.3
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 27 9.6
>AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical
protein Y53F4B.13 protein.
Length = 927
Score = 61.7 bits (143), Expect = 5e-10
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Frame = +1
Query: 328 FLDLCGGPGEFANYTMSLNPL--CKAYGVTLTN-NSVCVYKPTVCKRKNFTTITGPDKSG 498
F D+C GPG F+ Y + K +G TL + ++K T + F T G +G
Sbjct: 290 FADVCAGPGGFSEYMLWRKGFYNAKGFGFTLAGKDDFKLFKFTASSQYFFETFYGTKDNG 349
Query: 499 DVFDK-NV-VFEISIKCGNA---CDLVLADGSVDVNGRENEQERLNFDLIMCETQLILIC 663
DV D N+ E I G + L++ADG V G+EN QE L+ L +C+ + L
Sbjct: 350 DVMDPVNIDSLEAHISRGTSGLGVHLMMADGGFSVEGQENIQEILSKRLYLCQLLVSLCI 409
Query: 664 LRPGGN 681
+R GGN
Sbjct: 410 VREGGN 415
>AF078792-3|AAC26945.2| 635|Caenorhabditis elegans Hypothetical
protein Y40D12A.1a protein.
Length = 635
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/70 (35%), Positives = 33/70 (47%)
Frame = +1
Query: 481 GPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERLNFDLIMCETQLILI 660
GP GD+ + I K DLV ADGS + G+E E E + LI E ++ L
Sbjct: 191 GPSDDGDIEKFTEEYLIKQKLAGTFDLVTADGSTNTQGKEGEIESIVSSLISAEVEVALK 250
Query: 661 CLRPGGNCVL 690
LR G +L
Sbjct: 251 LLRRNGRLIL 260
>Z36238-6|CAA85279.2| 337|Caenorhabditis elegans Hypothetical
protein R74.7 protein.
Length = 337
Score = 41.9 bits (94), Expect = 4e-04
Identities = 35/141 (24%), Positives = 59/141 (41%)
Frame = +1
Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVY 438
R R KL++ID +F + + V +DLC PG ++ + Y V +
Sbjct: 22 RARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSK-----RLYEEDQEAKIVAID 76
Query: 439 KPTVCKRKNFTTITGPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 618
+ + G S D ++ V+ S G D+V+ DG+ DV G + E +
Sbjct: 77 LQPMAPIPGVIQLQGDITSVDTANQ-VIKHFS---GEKSDIVICDGAPDVTGIHSLDEFM 132
Query: 619 NFDLIMCETQLILICLRPGGN 681
+LI+ + L+ GGN
Sbjct: 133 QAELILAAFNITSHVLKEGGN 153
>AF078792-4|AAN84813.1| 261|Caenorhabditis elegans Hypothetical
protein Y40D12A.1b protein.
Length = 261
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 481 GPDKSGDVFDKNVVFEISIKCGNACDLVLADGSVDVNGRENEQERL 618
GP GD+ + I K DLV ADGS + G+E E E +
Sbjct: 191 GPSDDGDIEKFTEEYLIKQKLAGTFDLVTADGSTNTQGKEGEIESI 236
>Z80344-3|CAB02488.2| 491|Caenorhabditis elegans Hypothetical
protein F15D4.5 protein.
Length = 491
Score = 33.1 bits (72), Expect = 0.19
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Frame = +1
Query: 256 RRPRCW---RKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNN- 423
RR W R+ L KK H C V ++ CG N M N CK Y TL N
Sbjct: 387 RRVSTWFDRREKLTEQKKCHQCLEVYETVEFCGTRDNHTNCPME-NTFCK-YCKTLKGNQ 444
Query: 424 ----SVCVYKPTVCKR--KNFTTITGPDKSGDVFDK 513
+ P VC+ K T P K G + K
Sbjct: 445 PGWKEAAAHHPAVCEHAPKEHNTHEPPMKKGRIMSK 480
>Z93382-7|CAB07618.1| 214|Caenorhabditis elegans Hypothetical
protein F45G2.9 protein.
Length = 214
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 259 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTN 420
R R KL+EI++KF + T +D+ PG + + P A GV L N
Sbjct: 33 RARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWLQVVVQKCPNGYASGVDLQN 86
>Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical
protein C54E10.1 protein.
Length = 872
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 226 RSKLFDKRPTRRPRCWRKLLEIDK--KFHVCRHV 321
R K+F KRP R C KLLE+ K K H+ R +
Sbjct: 477 RFKIFIKRPERGDVCASKLLEVMKMEKLHILRSI 510
>Z50071-7|CAA90405.3| 356|Caenorhabditis elegans Hypothetical
protein T07D4.2a protein.
Length = 356
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 340 CGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVYKPTVCKRK 462
CG P E N+ L L +Y V + N C + T K K
Sbjct: 128 CGLPNEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLK 168
>Z50071-6|CAL64000.2| 372|Caenorhabditis elegans Hypothetical
protein T07D4.2c protein.
Length = 372
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 340 CGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVYKPTVCKRK 462
CG P E N+ L L +Y V + N C + T K K
Sbjct: 144 CGLPNEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLK 184
>Z50071-5|CAH04718.2| 396|Caenorhabditis elegans Hypothetical
protein T07D4.2b protein.
Length = 396
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 340 CGGPGEFANYTMSLNPLCKAYGVTLTNNSVCVYKPTVCKRK 462
CG P E N+ L L +Y V + N C + T K K
Sbjct: 168 CGLPNEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLK 208
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 659 IKISCVSHMIKSKLRRSCS-FSRPLTSTE-PSANTKSHALPHLMLISNTTFLSNTSPDLS 486
I+ SC+ ++ RR CS R T+T+ PS T+S NTT L ++ D+S
Sbjct: 311 IRSSCLPRYVECHRRRRCSRKQRCHTTTQPPSPTTESLPTSTTTYEMNTTSLETSTTDIS 370
>AC006832-4|AAF39996.1| 485|Caenorhabditis elegans Hypothetical
protein ZK355.4 protein.
Length = 485
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 346 GPGEFANYTMSLNPLCKAYGVTLTNNSV 429
G F N +M + C+ YG+++TNNS+
Sbjct: 108 GSLSFFNISMHMYFYCETYGLSITNNSL 135
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 376 SLNPLCKAYGVTLTNNSVCVYKPTVCKRKNFT 471
S +PLC GVT TN C + +C+ N T
Sbjct: 775 SYDPLCGTNGVTFTN--ACSLQKEICESANST 804
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,483
Number of Sequences: 27780
Number of extensions: 335537
Number of successful extensions: 974
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -