Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19m17
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.4  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 379 LNPLCKAYGVTLTNNSVCVYKPTV 450
           +  LC A  ++ T   VC+Y P +
Sbjct: 737 ITTLCVAISLSATVTLVCLYSPKI 760


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 379 LNPLCKAYGVTLTNNSVCVYKPTV 450
           +  LC A  ++ T   VC+Y P +
Sbjct: 827 ITTLCVAISLSATVTLVCLYSPKI 850


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 561 QIARVATLDANLEYNIFIKHVTRFVGPRNGC 469
           Q+  V  +D +     F+KH    +  RNGC
Sbjct: 353 QMKNVTIVDHHTASESFMKHYENEMRLRNGC 383


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 609 LFVFASINVDRAIGQHQIARVATLDANLEYNIFIKHVTRFVGPR 478
           +FVFA      A+G+  + +V  L + LEY++    ++R    R
Sbjct: 271 MFVFA------ALGEFVVVKVLDLRSQLEYDLQTSIMSRHYSTR 308


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 581 TEPSANTKSHAL 546
           TEPS++TKS+ L
Sbjct: 197 TEPSSSTKSYVL 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,876
Number of Sequences: 438
Number of extensions: 3935
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)